Brevundimonas sp. 'scallop': E4341_04465
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Entry
E4341_04465 CDS
T09204
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bres
Brevundimonas sp. 'scallop'
Pathway
bres03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bres00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E4341_04465 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bres03400
]
E4341_04465 (ligD)
Enzymes [BR:
bres01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E4341_04465 (ligD)
DNA repair and recombination proteins [BR:
bres03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E4341_04465 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QIF81003
UniProt:
A0A6G6RFG2
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All DBs
Position
914448..917021
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AA seq
857 aa
AA seq
DB search
MRGELKTYQAKRRFGETPEPKGAKARRAKGGFRYLIQRHAATRLHYDFRIESDGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKASKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTKEWTASKPTGRRGPAKPKPSKAAAKAKKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFADLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDEKTEGLVYFAFDLLFEGAEDLRKLPLSHRKARLQAYVDRIGA
PGSGAAGARLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGR
DEVVIGGWSSEGGTRFRSLLVGVREKGGLRYLGRVGTGYGEAVTKTLVPALKGVAADKSP
FAGAGAPKAAKDIHWVKPVLVAEVEHGGYTESGSLRQAVFKGLREDKTAAEVTEAPQPPT
DMGDAKKATTTVRPAGKPGKVVVAGVTLSSPDKVLWPAVGDRPAITKADLARYYEAAAER
ILPHVANRPTSIIRAPEGIGGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDVGGLVAI
AQSGGLELHPWGCAPGQPEVPDQITFDLDPDEGLDFADVIAASKVVKAKIEALGLAAFVK
TTGGKGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFI
DYLRNGRMATAVAPWSPRARPGAGIAFPLSWGQVKAGLDPAAFNLWTYAALLKKPDPWAD
FRASAVSLKSALKAMGV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgaaacgcccgagccg
aagggcgccaaggccaggcgtgcgaagggcggcttccgctatctgatccagcgccacgcg
gcgacgcgtctgcactatgatttccgtatcgagtcggacggggtgctgaaatcctgggcc
gtgaccaaggcgccgtcgcgcgacacggcggtcaaacgtctggcggtcgaagtcgaggat
catccgctggattacgggtcgttcgaggggacgattcccgacggcaactacggcgccggc
acggtgcagatgtgggatgtgggcacctgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgagcggctgaagggcaaatgggcg
ctgatccggctgaagagcgatcggggcaaagcctccaaacgcaacaattggctgctgcta
aaggagaaggacgacttcgccgtggcgggcgagggtgatgcgctggccgaaatcgacgcc
tctgtgacgacagggcggtcgctggccgagatcgcggatgggacgaaggagtggacggcg
tccaagccgaccgggcgtagaggcccggccaagcccaagccttcgaaagcggcggcgaag
gccaagaagccgccggccttcgtgccgatccagctgtgcaaggtgactgaccatccgccg
ggcgggacgggctgggcgcacgagatcaagttcgacggctatcgcatccagatcggcgtg
ggcggcggtcgggcggtcttgcggacgcgcaagggtctggactggagcgacaagttcgcg
gatctggcggcggatgcggcgacctggcccgacgcggtgatcgacggcgagctgtgcgcg
ctggacgacgatcacatgccggacttcggggcgttgcaggcggccatctcggacgagaag
acggaaggcttggtctatttcgccttcgatctgttgttcgagggggcggaggatttgcgt
aaactgccgctgtcgcatcgcaaggcgcgactgcaggcctatgtggaccggatcggcgct
ccagggtcgggggcggccggggcgcggctgcgttacgtcgagcatttcgcctcgaccggc
caggcggtgctggagagcgcctgccgcatggatctggaaggcgtgatctccaagaaactg
gatgccccctaccatgccgggcggtcatcgacctggctgaagtccaaatgccgcgggcgc
gatgaagtcgtgatcggcggctggtcgtccgagggcggcacgcggttccgctctctgctg
gtcggggtcagggaaaagggcggcctgcgctatctgggccgggtcgggaccggctatggc
gaggcggtgacgaagacgcttgttcctgcgctgaagggcgtggcggcggataaatccccc
ttcgccggggcgggcgcgcccaaggcggccaaggacatccattgggtcaagccggtgctg
gtcgccgaggtcgagcacggcggctataccgaatccggatcgctgcggcaggcggtgttc
aagggtttgcgggaagacaagacggccgccgaggtcaccgaggctccgcagccgcccacc
gacatgggcgacgcgaagaaggccacgaccacggtgcgaccggctggaaagcccggcaag
gtggtcgtggcgggcgtgaccctctctagccctgacaaggtgttgtggcccgccgtgggc
gaccggccggcgatcaccaaggccgatctggcccggtattacgaggcggccgccgagcgg
atattgccccatgtggcgaaccggccgacctcgatcatccgggcgcccgagggaatcggg
ggcgagaccttcttccagcgtcatgccatggcggggtcaaacccgcgactgaagctgatc
gacgtcaaggcccggaccccttacgtcgccgccgtcgatgtcggcggcctggtcgccatc
gcccagtcgggcgggctggaactgcacccctggggctgtgcgcccggccagccggaagtc
cccgatcagatcaccttcgacctggatcccgacgaggggctggacttcgccgacgtcatc
gccgcgtccaaggtcgtgaaggcgaagatcgaggcgctgggtctcgccgccttcgtcaag
acgaccggaggcaaggggctgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgc
gtgacctgggatcagaacaaggctttcgccaaggcggtggccgaggccatccgcgccgag
gcgccggaccggttcacaaccaccctggccaagaaggcgcggggcggaaagatcttcatc
gactatctgcgcaacgggcgaatggcgacggcggtcgcgccctggtcgccgcgcgcgcgg
ccgggggcggggatcgccttcccgctgtcgtgggggcaggtgaaggccgggctggacccc
gccgcattcaacctttggacctatgcggccttgctgaagaagcccgatccctgggccgat
ttccgcgcctcggcggtcagtttgaaatcggcgctgaaagcgatgggcgtctag
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