KEGG   Brevundimonas sp. 'scallop': E4341_04465
Entry
E4341_04465       CDS       T09204                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bres  Brevundimonas sp. 'scallop'
Pathway
bres03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bres00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E4341_04465 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bres03400]
    E4341_04465 (ligD)
Enzymes [BR:bres01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E4341_04465 (ligD)
DNA repair and recombination proteins [BR:bres03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E4341_04465 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QIF81003
UniProt: A0A6G6RFG2
LinkDB
Position
914448..917021
AA seq 857 aa
MRGELKTYQAKRRFGETPEPKGAKARRAKGGFRYLIQRHAATRLHYDFRIESDGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKASKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTKEWTASKPTGRRGPAKPKPSKAAAKAKKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFADLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDEKTEGLVYFAFDLLFEGAEDLRKLPLSHRKARLQAYVDRIGA
PGSGAAGARLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGR
DEVVIGGWSSEGGTRFRSLLVGVREKGGLRYLGRVGTGYGEAVTKTLVPALKGVAADKSP
FAGAGAPKAAKDIHWVKPVLVAEVEHGGYTESGSLRQAVFKGLREDKTAAEVTEAPQPPT
DMGDAKKATTTVRPAGKPGKVVVAGVTLSSPDKVLWPAVGDRPAITKADLARYYEAAAER
ILPHVANRPTSIIRAPEGIGGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDVGGLVAI
AQSGGLELHPWGCAPGQPEVPDQITFDLDPDEGLDFADVIAASKVVKAKIEALGLAAFVK
TTGGKGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFI
DYLRNGRMATAVAPWSPRARPGAGIAFPLSWGQVKAGLDPAAFNLWTYAALLKKPDPWAD
FRASAVSLKSALKAMGV
NT seq 2574 nt   +upstreamnt  +downstreamnt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgaaacgcccgagccg
aagggcgccaaggccaggcgtgcgaagggcggcttccgctatctgatccagcgccacgcg
gcgacgcgtctgcactatgatttccgtatcgagtcggacggggtgctgaaatcctgggcc
gtgaccaaggcgccgtcgcgcgacacggcggtcaaacgtctggcggtcgaagtcgaggat
catccgctggattacgggtcgttcgaggggacgattcccgacggcaactacggcgccggc
acggtgcagatgtgggatgtgggcacctgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgagcggctgaagggcaaatgggcg
ctgatccggctgaagagcgatcggggcaaagcctccaaacgcaacaattggctgctgcta
aaggagaaggacgacttcgccgtggcgggcgagggtgatgcgctggccgaaatcgacgcc
tctgtgacgacagggcggtcgctggccgagatcgcggatgggacgaaggagtggacggcg
tccaagccgaccgggcgtagaggcccggccaagcccaagccttcgaaagcggcggcgaag
gccaagaagccgccggccttcgtgccgatccagctgtgcaaggtgactgaccatccgccg
ggcgggacgggctgggcgcacgagatcaagttcgacggctatcgcatccagatcggcgtg
ggcggcggtcgggcggtcttgcggacgcgcaagggtctggactggagcgacaagttcgcg
gatctggcggcggatgcggcgacctggcccgacgcggtgatcgacggcgagctgtgcgcg
ctggacgacgatcacatgccggacttcggggcgttgcaggcggccatctcggacgagaag
acggaaggcttggtctatttcgccttcgatctgttgttcgagggggcggaggatttgcgt
aaactgccgctgtcgcatcgcaaggcgcgactgcaggcctatgtggaccggatcggcgct
ccagggtcgggggcggccggggcgcggctgcgttacgtcgagcatttcgcctcgaccggc
caggcggtgctggagagcgcctgccgcatggatctggaaggcgtgatctccaagaaactg
gatgccccctaccatgccgggcggtcatcgacctggctgaagtccaaatgccgcgggcgc
gatgaagtcgtgatcggcggctggtcgtccgagggcggcacgcggttccgctctctgctg
gtcggggtcagggaaaagggcggcctgcgctatctgggccgggtcgggaccggctatggc
gaggcggtgacgaagacgcttgttcctgcgctgaagggcgtggcggcggataaatccccc
ttcgccggggcgggcgcgcccaaggcggccaaggacatccattgggtcaagccggtgctg
gtcgccgaggtcgagcacggcggctataccgaatccggatcgctgcggcaggcggtgttc
aagggtttgcgggaagacaagacggccgccgaggtcaccgaggctccgcagccgcccacc
gacatgggcgacgcgaagaaggccacgaccacggtgcgaccggctggaaagcccggcaag
gtggtcgtggcgggcgtgaccctctctagccctgacaaggtgttgtggcccgccgtgggc
gaccggccggcgatcaccaaggccgatctggcccggtattacgaggcggccgccgagcgg
atattgccccatgtggcgaaccggccgacctcgatcatccgggcgcccgagggaatcggg
ggcgagaccttcttccagcgtcatgccatggcggggtcaaacccgcgactgaagctgatc
gacgtcaaggcccggaccccttacgtcgccgccgtcgatgtcggcggcctggtcgccatc
gcccagtcgggcgggctggaactgcacccctggggctgtgcgcccggccagccggaagtc
cccgatcagatcaccttcgacctggatcccgacgaggggctggacttcgccgacgtcatc
gccgcgtccaaggtcgtgaaggcgaagatcgaggcgctgggtctcgccgccttcgtcaag
acgaccggaggcaaggggctgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgc
gtgacctgggatcagaacaaggctttcgccaaggcggtggccgaggccatccgcgccgag
gcgccggaccggttcacaaccaccctggccaagaaggcgcggggcggaaagatcttcatc
gactatctgcgcaacgggcgaatggcgacggcggtcgcgccctggtcgccgcgcgcgcgg
ccgggggcggggatcgccttcccgctgtcgtgggggcaggtgaaggccgggctggacccc
gccgcattcaacctttggacctatgcggccttgctgaagaagcccgatccctgggccgat
ttccgcgcctcggcggtcagtttgaaatcggcgctgaaagcgatgggcgtctag

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