Brevundimonas sp. SGAir0440: E7T10_05170
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Entry
E7T10_05170 CDS
T06410
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brev
Brevundimonas sp. SGAir0440
Pathway
brev03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brev00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E7T10_05170 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brev03400
]
E7T10_05170 (ligD)
Enzymes [BR:
brev01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E7T10_05170 (ligD)
DNA repair and recombination proteins [BR:
brev03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E7T10_05170 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCQ98102
UniProt:
A0A4P8QAB2
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All DBs
Position
1066954..1069515
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AA seq
853 aa
AA seq
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MRGELKTYQAKRRFGETPEPKGAKGKRAKGGFRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKPFKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTKEWTAAKPTGRKGPAKPKPSKAAAKARKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFPDLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDENTQGLIYFAFDLLFEGAEDLRKLPLSHRKARLQAYVDRIGK
AAAGRLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVRDKGGLRYLGRVGTGYGEAVTKTLVPALKDVAAEKSPFAGA
GAPKAAKDIHWVKPVLVAEVEHGGYTESGSLRQAAFKGLREDKTAAEVTQAPQPPADMGD
AKKTTTTVRSAVKPGKVVVAGVTISSPDKVLWPAVGDRPAITKADLARYYEAAAERILRH
VADRPTSIIRAPEGIGGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDVGGLVAIAQSG
GLELHPWGCAPGQPEIPEQITFDLDPDEGLNFADVIAASKVVKAKIEALGLAAFVKTTGG
KGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFIDYLR
NGRMATAVAPWSPRARPGAGIAFPLSWGQVKAGLDPAAFNLWTYAALLKKPDPWADFRAS
AVSLKSALKKMGV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgaaacgcccgagccg
aagggcgccaagggcaagcgcgcgaagggcggcttccgctatttgatccagcgccacgcg
gcgacgcgtctgcactatgattttcgcatcgaggcggacggggtgctgaaatcctgggcc
gtgacaaaggcgccgtcgcgtgacacggcggtcaagcggctggcggtcgaggtcgaggat
catccgctggattacgggtcgttcgaggggacgattcccgacggcaactacggcgccggc
acggtgcagatgtgggatgtcggcacttgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgagcggctgaaaggcaaatgggcg
ctgatccggttgaagagcgatcggggcaaacccttcaaacgcaacaactggctgctgcta
aaggagaaggacgatttcgccgtggcgggcgagggcgatgcgctggccgaaatcgacgcc
tcggtgacgaccgggcggtcgctggccgagattgcggatgggacgaaggagtggacggcg
gccaagccgacggggcgtaaaggcccggccaagcccaagccctcgaaagcggcggcgaag
gcaagaaagccgccggcattcgtgccgatccagctgtgcaaggtgacagaccatccgccg
ggcggaacgggctgggcgcacgagatcaagttcgacggctatcgcatccagatcggcgtc
ggcggcggtcgggcggtcttgcggacgcgcaagggtctggactggagcgacaagttccca
gacctcgcggcggatgcggcgacctggcctgacgccgtgatcgacggcgagctgtgcgcg
ctggacgacgatcacatgccggacttcggggcgttgcaggccgccatttcggacgagaat
acgcaaggcctgatctatttcgccttcgacctgttgttcgagggggcggaggatctgcgc
aaactgccgctgtcgcatcgcaaggcgcggctgcaggcctatgtggaccggattggaaag
gcggccgctgggcggctgcgctatgtcgagcatttcgcctcgaccggtcaggcggtgctg
gagagcgcctgccggatggatctggaaggcgtgatctccaagaagctggacgccccctat
catgccgggcggtcatcgacctggctgaagtccaaatgccggggtcgcgatgaagtcgtg
atcggcggctggtcgtccgagggcggcacgcggttccgctccctgctggtcggggtcagg
gacaagggcggccttcgctatctgggtcgggtcgggaccggctatggcgaggcggtgacg
aagacgcttgttccggcgctgaaggacgtggcggcggagaaatcccccttcgccggggcg
ggcgcgcccaaggcggccaaggacatccattgggtcaagccggtgctggtcgccgaggtc
gagcatggcggttataccgaatccggatcgctgcggcaggcggcgttcaagggtttgcgc
gaagacaagaccgccgccgaggtcacccaggcgccccaaccgccggccgatatgggcgac
gcgaagaagaccacgacgacggtgcgatcggctgtaaagcccggcaaggtggtcgtggcg
ggcgtgaccatctccagccccgacaaggtgttgtggcccgccgtgggcgaccggccggcg
atcaccaaggccgacctagcgcgctactacgaggcggcggccgagcggatcctgcgccat
gtggcggaccggccgacctccattatccgcgcgcccgaggggattggcggcgagaccttc
ttccagcggcacgccatggcggggtcgaacccgcggctgaagctgatcgacgtcaaggcc
cgcaccccttacgtcgccgccgtcgatgtcggcggcctggtcgccatcgcccagtcgggc
gggctggaactgcacccctggggctgcgcgcccggccagccggaaatccctgagcagatc
accttcgacctggatccggacgaggggctgaacttcgccgacgtcatcgccgcgtccaag
gtcgtgaaggcgaagatcgaggcgctgggtctggccgccttcgtcaagacgaccgggggc
aagggtttgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgcgtgacctgggat
cagaacaaggccttcgccaaggcggtggccgaggccatccgcgccgaggcgccagaccgg
ttcaccacgaccctggccaagaaggcgcggggcggaaagatcttcatcgactatctgcgc
aacgggcggatggcgacggcggtcgcgccctggtcgccgcgcgcacggccgggggcgggg
atcgcttttccgctgtcgtgggggcaggtcaaggccgggctggatcccgccgcattcaac
ctttggacctatgcggccttgctgaagaagcccgatccctgggccgatttccgcgcctcg
gcggtcagtttgaaatcggcgttgaagaagatgggcgtctag
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