KEGG   Brevundimonas sp. SGAir0440: E7T10_05170
Entry
E7T10_05170       CDS       T06410                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brev  Brevundimonas sp. SGAir0440
Pathway
brev03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brev00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    E7T10_05170 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brev03400]
    E7T10_05170 (ligD)
Enzymes [BR:brev01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     E7T10_05170 (ligD)
DNA repair and recombination proteins [BR:brev03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     E7T10_05170 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QCQ98102
UniProt: A0A4P8QAB2
LinkDB
Position
1066954..1069515
AA seq 853 aa
MRGELKTYQAKRRFGETPEPKGAKGKRAKGGFRYLIQRHAATRLHYDFRIEADGVLKSWA
VTKAPSRDTAVKRLAVEVEDHPLDYGSFEGTIPDGNYGAGTVQMWDVGTWEPQEPDLEAA
WAKGQIKMILHGERLKGKWALIRLKSDRGKPFKRNNWLLLKEKDDFAVAGEGDALAEIDA
SVTTGRSLAEIADGTKEWTAAKPTGRKGPAKPKPSKAAAKARKPPAFVPIQLCKVTDHPP
GGTGWAHEIKFDGYRIQIGVGGGRAVLRTRKGLDWSDKFPDLAADAATWPDAVIDGELCA
LDDDHMPDFGALQAAISDENTQGLIYFAFDLLFEGAEDLRKLPLSHRKARLQAYVDRIGK
AAAGRLRYVEHFASTGQAVLESACRMDLEGVISKKLDAPYHAGRSSTWLKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVRDKGGLRYLGRVGTGYGEAVTKTLVPALKDVAAEKSPFAGA
GAPKAAKDIHWVKPVLVAEVEHGGYTESGSLRQAAFKGLREDKTAAEVTQAPQPPADMGD
AKKTTTTVRSAVKPGKVVVAGVTISSPDKVLWPAVGDRPAITKADLARYYEAAAERILRH
VADRPTSIIRAPEGIGGETFFQRHAMAGSNPRLKLIDVKARTPYVAAVDVGGLVAIAQSG
GLELHPWGCAPGQPEIPEQITFDLDPDEGLNFADVIAASKVVKAKIEALGLAAFVKTTGG
KGLHVVVPIKTDARSRVTWDQNKAFAKAVAEAIRAEAPDRFTTTLAKKARGGKIFIDYLR
NGRMATAVAPWSPRARPGAGIAFPLSWGQVKAGLDPAAFNLWTYAALLKKPDPWADFRAS
AVSLKSALKKMGV
NT seq 2562 nt   +upstreamnt  +downstreamnt
atgcgcggtgaactgaagacctatcaggccaagcgccggttcggcgaaacgcccgagccg
aagggcgccaagggcaagcgcgcgaagggcggcttccgctatttgatccagcgccacgcg
gcgacgcgtctgcactatgattttcgcatcgaggcggacggggtgctgaaatcctgggcc
gtgacaaaggcgccgtcgcgtgacacggcggtcaagcggctggcggtcgaggtcgaggat
catccgctggattacgggtcgttcgaggggacgattcccgacggcaactacggcgccggc
acggtgcagatgtgggatgtcggcacttgggagccgcaggagccggacctggaggcggcc
tgggccaagggtcagatcaagatgatccttcacggcgagcggctgaaaggcaaatgggcg
ctgatccggttgaagagcgatcggggcaaacccttcaaacgcaacaactggctgctgcta
aaggagaaggacgatttcgccgtggcgggcgagggcgatgcgctggccgaaatcgacgcc
tcggtgacgaccgggcggtcgctggccgagattgcggatgggacgaaggagtggacggcg
gccaagccgacggggcgtaaaggcccggccaagcccaagccctcgaaagcggcggcgaag
gcaagaaagccgccggcattcgtgccgatccagctgtgcaaggtgacagaccatccgccg
ggcggaacgggctgggcgcacgagatcaagttcgacggctatcgcatccagatcggcgtc
ggcggcggtcgggcggtcttgcggacgcgcaagggtctggactggagcgacaagttccca
gacctcgcggcggatgcggcgacctggcctgacgccgtgatcgacggcgagctgtgcgcg
ctggacgacgatcacatgccggacttcggggcgttgcaggccgccatttcggacgagaat
acgcaaggcctgatctatttcgccttcgacctgttgttcgagggggcggaggatctgcgc
aaactgccgctgtcgcatcgcaaggcgcggctgcaggcctatgtggaccggattggaaag
gcggccgctgggcggctgcgctatgtcgagcatttcgcctcgaccggtcaggcggtgctg
gagagcgcctgccggatggatctggaaggcgtgatctccaagaagctggacgccccctat
catgccgggcggtcatcgacctggctgaagtccaaatgccggggtcgcgatgaagtcgtg
atcggcggctggtcgtccgagggcggcacgcggttccgctccctgctggtcggggtcagg
gacaagggcggccttcgctatctgggtcgggtcgggaccggctatggcgaggcggtgacg
aagacgcttgttccggcgctgaaggacgtggcggcggagaaatcccccttcgccggggcg
ggcgcgcccaaggcggccaaggacatccattgggtcaagccggtgctggtcgccgaggtc
gagcatggcggttataccgaatccggatcgctgcggcaggcggcgttcaagggtttgcgc
gaagacaagaccgccgccgaggtcacccaggcgccccaaccgccggccgatatgggcgac
gcgaagaagaccacgacgacggtgcgatcggctgtaaagcccggcaaggtggtcgtggcg
ggcgtgaccatctccagccccgacaaggtgttgtggcccgccgtgggcgaccggccggcg
atcaccaaggccgacctagcgcgctactacgaggcggcggccgagcggatcctgcgccat
gtggcggaccggccgacctccattatccgcgcgcccgaggggattggcggcgagaccttc
ttccagcggcacgccatggcggggtcgaacccgcggctgaagctgatcgacgtcaaggcc
cgcaccccttacgtcgccgccgtcgatgtcggcggcctggtcgccatcgcccagtcgggc
gggctggaactgcacccctggggctgcgcgcccggccagccggaaatccctgagcagatc
accttcgacctggatccggacgaggggctgaacttcgccgacgtcatcgccgcgtccaag
gtcgtgaaggcgaagatcgaggcgctgggtctggccgccttcgtcaagacgaccgggggc
aagggtttgcacgtcgtcgtgccgatcaagaccgacgcccgctcgcgcgtgacctgggat
cagaacaaggccttcgccaaggcggtggccgaggccatccgcgccgaggcgccagaccgg
ttcaccacgaccctggccaagaaggcgcggggcggaaagatcttcatcgactatctgcgc
aacgggcggatggcgacggcggtcgcgccctggtcgccgcgcgcacggccgggggcgggg
atcgcttttccgctgtcgtgggggcaggtcaaggccgggctggatcccgccgcattcaac
ctttggacctatgcggccttgctgaagaagcccgatccctgggccgatttccgcgcctcg
gcggtcagtttgaaatcggcgttgaagaagatgggcgtctag

DBGET integrated database retrieval system