Bdellovibrio reynosensis: MNR06_12020
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Entry
MNR06_12020 CDS
T08711
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brey
Bdellovibrio reynosensis
Pathway
brey03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MNR06_12020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brey03400
]
MNR06_12020 (mfd)
Enzymes [BR:
brey01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MNR06_12020 (mfd)
DNA repair and recombination proteins [BR:
brey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MNR06_12020 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UOF00424
LinkDB
All DBs
Position
complement(2561920..2565441)
Genome browser
AA seq
1173 aa
AA seq
DB search
MKAELTHTRLETILERAFETSRGKIQVTGAASPLALAFFLSQTYSKKINGLPHLVVVGSL
QEATKLQQLLEFFDPTRQSYILPSFDVSPYSGLYPNSRVTSDRIRFLAKAQNAKPGEIFI
SYSDALMQKTMPVKILKDYSRILKSGDELPEDIAEYLNSLGYTSAPMVEDKGQYALRGGI
VDIFPPCEDSPVRLDLFGDQIESIRHFNVSDQRSSDEVNNFCLTPAREVLFRDETHERLL
QRVRETLGDRPVDKSDSEEMLRSLVLKNSFPGIEFLLPYFYGDLCSPVEHFGSGLHIWFL
DPVEISRWADEVSAELKADYASSLSHVIRPELSLLYTPFDKIVFPSGSREIYFSSLEYFE
DENTEDARVEYRTALTQDFTNLALANAVGSEQWLQAAANKLHRWRGEGYRIFIGTKNQSH
IERLKLVFDKLDLKAARAAEDEYRWDSWLAEQEADPHLVHIIPRYLIEALRLEEERIVFL
RDEDFYGKKQRARDTSGAQDFQKQAKRLAFGDLKPGDLVVHVKHGVGQYEGLKIMNIGGV
ESEYIQIGYKDKDKLYLPVYRVGQLQKFSGASPTSILDKLGGTGWEKTKSKVKAHVRDIA
SDLLSLYAKRAEMHRPPFSLNEGEITTFENSFPYEETDDQNRAITDIHRDLLSTKPMDRL
ICGDVGFGKTEVAMRAAFFAVQARKQVALLAPTTVLTFQHFETIKKRFEGWPVDIRVLNR
FVSTAETKKTIQDLKDGKVDIIVGTHKLLGSAIQYKDLGLLIIDEEQKFGVTHKEKIKKI
KTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDEETIRKAVTAE
ISRGGQVYFIHNRIESIYGLADEIRAIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVL
ICTAIVESGMDVPRANTMFIDSAHMFGLSQLYQLRGRVGRSKTRAYCYLMMPRNRKLDKE
QQERLKIIQENTALGSGIKIAQYDLELRGTGNILGEEQSGHVNSVGYELYMDLLNEALAE
AKGESIEDMELDPEINLRIPAMIPDNYIADIRIRLSYYKALADITSHEDLDRIEEELRDQ
FGQIPEPTINLMGLMLIRRQCKELGVRDISAGVKSVSLIFTEKTKLKPETVIQLAVRESK
KYSLTPDNRLNIKLPSISWSAVHDELEQLLKLI
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgaacttacgcacacaaggcttgaaacaattcttgaaagagcctttgaaaca
tcgcgaggaaaaattcaagtaaccggggctgcctccccgcttgcgcttgctttctttttg
tcgcaaacatactctaaaaaaatcaacggcttgccgcacttagttgtggttggaagtctg
caagaagcgacaaaacttcagcagcttctagagttctttgacccaactcgtcagagctat
attctgccgtcgtttgatgtttcgccttattcgggtctttatccaaactcgagagttact
tcagaccgaattcgttttctagcaaaagcgcaaaacgcaaagcctggtgaaatcttcatt
tcctattctgacgcgctgatgcaaaaaacaatgccggtgaaaatcctgaaggattattcg
cgtattctaaaatctggtgacgaacttcctgaagacatcgcggagtatttaaattcgctc
ggttatacttcagcgccgatggttgaagataaaggacagtatgctttgcgaggaggtatc
gttgatatcttcccgccttgtgaagactcgccagtgcgtttggatttgttcggcgatcaa
atcgaatcgataagacatttcaatgtttctgatcagcgcagttctgatgaagtgaataat
ttctgtttaaccccggcgcgcgaagttttatttcgcgatgaaacccacgagcgcctgttg
caacgagtgcgtgaaactctaggtgatcgcccggttgataaatcagattctgaagagatg
cttcgttctttagttttaaagaactcatttcctggaattgagttcttgcttccgtatttt
tacggcgacctttgttccccggtagaacattttggttctggtttacatatttggttttta
gatcccgttgaaatctctcgctgggccgatgaagtgtctgccgaactgaaagctgattat
gcttcaagcctttcccatgtgattaggcctgagcttagtttgttatatactccttttgat
aaaatagtgtttccttcagggtcgcgagagatctatttttcttcattagaatactttgaa
gatgaaaacaccgaagacgccagggttgagtatcgtactgctttgactcaagattttaca
aacttggctttggctaacgccgttggatctgaacagtggttgcaagcagcggcaaacaaa
ctgcatcgttggcgtggcgaagggtaccgcatctttattggcacaaaaaaccaatcgcac
attgaacggttgaagcttgtttttgataagttggatttaaaggcggcccgcgctgctgag
gatgaataccggtgggattcttggcttgctgaacaagaagccgatccccatttagtacat
attattcctagatacttgattgaagctttgcgtttggaggaagaacgcatcgtctttttg
cgcgatgaagatttttacggaaaaaaacaacgggcccgggacacttcgggcgctcaggat
tttcaaaagcaggccaagcgcctggcattcggtgacttaaagcctggtgatttagttgtt
cacgttaaacacggcgtgggtcaatacgaaggcttaaagatcatgaacatcggcggagtc
gaatctgaatacattcagattggctacaaagataaagataagctgtatttgcctgtttat
cgcgtcggccagttgcagaagttttctggggcttcgccgacttctatattagataagctt
ggtggtacggggtgggaaaagactaaatcaaaagttaaagcccatgttcgtgatattgct
tctgacttattaagcttgtatgcgaaacgcgcggaaatgcaccgtcctccgtttagtttg
aacgagggcgagatcactacctttgaaaattcttttccttatgaagagaccgacgatcaa
aaccgcgcgatcacggatattcaccgagatttgttgtcgactaaaccaatggatcgtttg
atttgtggtgatgtaggttttggtaaaacggaagtggcgatgcgcgcggcgttttttgcg
gttcaagcgcgcaagcaagtggctttgttggctccgacgactgttttaactttccagcac
tttgaaaccattaagaagcgttttgaaggatggccggtggacattcgcgtgttgaatcgt
tttgtttctacggctgaaactaaaaagactattcaagatctaaaagatggtaaggtggat
atcattgttggtacccacaagttattgggctctgcgattcaatataaagatcttggctta
ttgattatcgacgaagaacaaaagttcggcgttacccataaggaaaaaattaagaagatc
aaaaccagtgttgatactttgactttgtctgccaccccgattcctagaactttgaatatg
gctctggttggtattcgagatttaagcttaattaatacggctcctgtcgatcggcttcct
acccgtacgtttgtcactaagtttgacgaagaaacaattcgcaaggccgtgacggctgaa
atttcgcgtggtggtcaggtttactttattcacaatcgcattgaatctatttacggactg
gctgatgagattcgggccattgttcccgaggcccgcattcgcgtagcccacgggcagatg
gaagaacatgaattagaaaaagcgatgcttgcgttcttccatcacgaaattgatgtctta
atttgtacggcgattgttgagtccggcatggatgtgccgcgcgcgaatacgatgttcatc
gattcagcgcacatgtttggtttatcgcaattgtatcaattacgtggccgcgtagggcga
agtaaaacccgcgcttattgctacttgatgatgccaagaaatcgcaagctagataaagaa
cagcaagaacgcttaaagatcatccaagaaaacactgctttaggaagcggaatcaaaatc
gcccaatacgatttagaattgcgcggaaccggaaacatcttaggcgaagaacaatctggc
cacgtaaattccgtaggctatgaattgtacatggatcttttaaacgaagctttggcagaa
gcaaaaggcgaaagcatcgaagacatggaactagatccagaaatcaacttgcgaattcca
gcgatgatcccagacaactacatcgcagatatcagaattcgtttaagttactacaaagca
ttggctgacattacttcccacgaggacctagatcgcatcgaagaggaactacgcgatcag
tttggccaaatcccagaaccaacaataaacttgatggggctaatgttgattcgtcgccag
tgtaaagaactaggcgtgcgcgacatcagcgctggtgtaaaatcagtttctttgatcttc
acagaaaaaacgaagttaaaaccggaaactgtaattcaattggcggtaagggaaagcaag
aagtactctctgacgccggataatcgattgaatattaagctgccgagtatttcttggtca
gcagttcacgatgagcttgagcaacttttgaaacttatttaa
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