Brevundimonas sp. MF30-B: E4M01_10840
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Entry
E4M01_10840 CDS
T06201
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brf
Brevundimonas sp. MF30-B
Pathway
brf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E4M01_10840 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brf03400
]
E4M01_10840 (ligD)
Enzymes [BR:
brf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E4M01_10840 (ligD)
DNA repair and recombination proteins [BR:
brf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E4M01_10840 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBX38213
LinkDB
All DBs
Position
2139631..2142183
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AA seq
850 aa
AA seq
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MRGELETYQKKRNFTATPEPKGRKVRGKSKALRYLIQRHAATRLHYDFRIEHDGVLKSWA
VTKAPSRDPAVKRLAVEVEDHPLDYGGFEGTIPSGNYGAGTVQMWDEGRWTPQDEDLDAA
FKKGVLKLSLEGERLKGGWALIRLKSDRGKPSKRANWLLIKEKDEHAVEGEGDALAEIDA
SVTTGRSLAEIADGSKQWTASKPTGRKAPPKPKPSKAQTSTARKPHAFVPIQFAKVVDHP
PGAAGWVHEIKFDGYRIQIAPGGGKATLRTRNGLDWTDRFLALSEQAAAWPDAVIDGELC
ALDGDHMPDFSALQTAISEGKTDDLIYFAFDLLFEGGEDLRALPLSHRKARLQAYVDRVA
ESGPNLRFVDHFASSGEAVLKSACRMDLEGVISKKLDAPYAAGRSSTWVKSKCRGRDEVV
IGGWSSEGGARFRSLLVGVKDKGGLRYMGRVGTGYSQALLKTLVPALKAQGADKNPFVGA
GAPKGGRDIHWVKPVLVAEIEHAGVTEGGSVRQAAFKGLREDKPAKEVTAEPQAPASTTA
SPPKAKARGKDKVVVAGVTISSPDKVLWPARDGRPAVTKADLARYYEMAADRILPHVADR
PVSIIRAPEGIEGETFFQRHAMAGHSPRLKLIDVKERKPYVGVVDVGGLVAIGQSGGLEL
HPWGCRPDDPETPDQITFDLDPDEGLDFDDVIAAARLLKPRLEELGLTPFVKTTGGKGLH
VVVPIKSDGRSRVEWDQAKAFARAVSEALKTEHPDRFTTTLAKKARGGKIFLDYLRNGRM
ATAVAPWSPRARPGAGVAFPLSWSQVKKGLDPAAFTLHDAAALLKKPDPWKDFRKAEASL
RPAMRVFQKS
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtgaactcgagacctatcagaagaagcggaacttcacggccacccccgagccg
aagggcaggaaggtgcgcggcaagtccaaggcgctgcgctatctgatccagcgccacgcg
gccacgcgcctgcactacgacttccgcatcgagcacgatggcgtcctgaaatcctgggcg
gtgaccaaggcgccgtcgcgcgaccccgccgtcaaacgcctggccgtcgaggtcgaggat
catccgctcgactacggcggcttcgagggcaccatcccttccggcaactacggcgccggc
acggtgcagatgtgggacgaagggcgctggacgccccaggacgaggacctggacgccgcc
ttcaaaaagggcgtcctgaagctgtcgctcgaaggtgaaaggctaaagggcggctgggcg
ctgatccgtctgaagtccgatcgcggcaagccgtccaagcgcgccaactggctgctcatc
aaggaaaaggacgaacacgccgtggagggcgaaggggacgccctcgccgagatcgacgcc
tcggtgacgaccggccgcagcctggccgagatcgcggacggctccaaacagtggaccgcc
tccaagccgacgggccgcaaggcgccgcccaagccgaaaccgtccaaggctcagacgtcc
accgctcgcaaaccgcacgccttcgtgccgatccagttcgccaaggtcgtggaccatccg
cccggcgcggcgggctgggtgcacgagatcaagttcgacggctaccgcatccagatcgcg
cccggcggtggcaaggcgaccctgcgcacgcgcaacggcctggactggaccgatcgcttc
ctggccctctccgaacaggcggccgcctggcccgacgctgtgatcgacggcgagctttgc
gcgctggacggcgaccatatgcccgacttctcggcgctgcagacggcgatctcggaaggg
aagaccgacgacctgatctacttcgccttcgatcttctgttcgagggcggcgaggatctg
cgcgctctgcccctgtcgcatcgcaaggcgcggcttcaggcctatgtcgaccgggtggcc
gagtccggcccgaacctgcgcttcgtcgaccatttcgcctcgtccggcgaagcggtgctc
aagagcgcgtgtcgcatggatctggaaggcgtcatctccaagaagctggacgcgccctac
gccgccggccggtcttcgacctgggtcaaatcgaagtgccgggggcgcgacgaggtggtc
atcggcggctggtcgtccgagggcggcgcgcggttccggtcccttctggtcggggtcaag
gacaagggcggcctgcgttacatgggtcgcgtcgggacgggctattcccaggcgctgctt
aagaccctggtccccgcgctcaaggcgcagggcgcggacaagaacccctttgtcggcgcc
ggcgcgcccaagggcgggcgcgatattcactgggtgaagcccgtcctggtggccgagatc
gaacacgccggcgtcaccgagggcggctcggtgcgccaggccgccttcaagggcctgcgc
gaggacaagcccgccaaggaggtgaccgcagaacctcaggctccggcgtcgaccacggcc
tcgcctcccaaggccaaggcgcgcggcaaggacaaggtcgtggtggcgggcgtgacgatc
tccagccccgacaaggtgctgtggcccgcgcgcgacggccgacccgccgtcaccaaggct
gatctggcgcgctattacgagatggcggccgaccgcatcctgccgcatgtcgccgaccgg
ccggtgtccattatccgcgcgcccgaaggcatcgagggcgagaccttcttccagcgccac
gccatggccggccacagcccgcgtctgaagttgatcgacgtgaaggagcgcaaaccctac
gtcggcgtggtcgatgtcggcggcttggtcgccatcggccagtccggcgggttggagctt
catccctggggctgccgaccggacgatcccgagacgccggaccagatcaccttcgatctg
gaccccgacgaaggcctggacttcgacgatgtcatagccgcggcccggctgctgaagccg
cgcctggaggaactgggcctgacgcccttcgtcaagacgaccggcggcaagggtctgcac
gtcgtcgtgcccatcaagtccgacggccgcagtcgtgtcgaatgggatcaggccaaggcc
ttcgccagggcggtgtcggaggcgctgaagactgaacaccccgaccgtttcacgaccacc
ctggccaaaaaggcgcgcggcgggaagatcttcctcgactatctgcgcaacggccgcatg
gcgaccgcagtcgcgccctggtcgccccgcgcccggccgggcgcgggcgtcgccttcccg
ctgtcctggagtcaggtgaagaagggcctcgaccccgccgccttcaccctgcacgacgcg
gcggctctgctcaagaagccggatccgtggaaggacttccgcaaggccgaggccagcctg
aggcctgccatgcgggtctttcagaagagctag
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