Mycetohabitans rhizoxinica: RBRH_03043
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Entry
RBRH_03043 CDS
T01355
Name
(GenBank) Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
RBRH_03043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_03043
Enzymes [BR:
brh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
RBRH_03043
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
RBRH_03043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
Viral_helicase1
UvrD-helicase
Helicase_RecD
SH3_13
AAA_22
RecD_N
DEAD
SLFN-g3_helicase
HTH_23
Flavi_DEAD
HTH_36
T2SSE
CbiA
MukB
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CBW76795
UniProt:
E5AUM1
LinkDB
All DBs
Position
pBRH01:complement(374251..376326)
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AA seq
691 aa
AA seq
DB search
MMTDIMLAQGFSRRIGALAQSLGAAAGDARVAAAAAAMVSAATANGHVCIELAALARQLG
QPSDTVRASLLASGVATRIDDDEPAPRLPLVIDLDDRLYLARYYEFERGLANALSARARA
EFDDASFDDAQRWRNVLTRYFGEASGSDLDWQRVAAAVALSGQLTIVSGGPGTGKTTTVV
GVLACLLDAKPDLRIALAAPTGKAAQRMLEALASRADRLAHDIAAKLPTASYTLHRLLGS
TSDRGFRHHRRNSLPYDVIVVDEASMIDVALASRLVDAVAPRARLILLGDKDQLAAVDAG
AVFAELSAHPCYVGQRAERIAQALGCTVDTLRNALAAHVRGGLPQLQPATLGQAATPTRL
TASAPPAAPAPPSASAQRDLFADDNPAVGADIVEPAPNDTARAADGAQPAALANCVVWLQ
TNYRFGLDSPIGQLSSAIRDGSPADALGVLDAADDRAPAHFIDDGGPAIGHAARDYIARG
FARYANLLAGMLQRCESQAAALFDALNAFRVLCAVRAGPHGVDALNEWISAELRRVARLP
LAPAARWFAGRPVIVTRNDYALGLFNGDIGIALPAGDGTLRVVFEQGAGQRRSVSPAMLP
SHETAFALTVHKSQGSEFERAALVLPPTFSRALSRELIYTAVTRARAQITIIGTRAVLAQ
AIGTPTRRDTGLSARLRYAEARARRETASSR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
gtgatgactgacatcatgctggcccaggggttctcgcgccggatcggcgcgctcgcgcaa
agcttgggggcagccgccggcgatgcacgcgtcgctgctgctgctgccgcgatggtcagc
gcggcgactgcaaatggacatgtctgcatcgagctggcagcgcttgcgcggcaactcggg
cagccgtccgacacagtccgcgcgtcgctgcttgcaagcggtgttgccacgcgcatcgat
gacgacgagccggcgccccgtttgccgctggtaatcgacctcgatgaccgactgtatctc
gcacgctattacgaattcgagcgtgggcttgctaatgcactgagtgcgcgcgcgcgggcg
gaatttgacgatgcgtcgtttgatgacgcgcagcggtggcgtaacgtactgacccgctat
tttggcgaggcgagcggcagcgacctcgactggcagcgtgtcgcggcggctgtcgccttg
tccgggcaactgacgattgttagcggtgggccgggcacgggtaagacgaccacggtcgtc
ggcgtgctagcctgtttgctcgatgccaagccggatctgcgcatcgcgctggcggcgccc
actggcaaggcagcacagcgcatgctggaggcattggcgtcccgcgccgaccgattggct
cacgatatcgccgccaagctgccgaccgcgtcgtatacgctgcatcgattgctgggcagc
acatcggacaggggttttcgccatcatcggcgcaattctttgccgtacgatgtcatcgtc
gttgacgaggcttcgatgatcgacgtcgcgctggcaagccggttggtggacgccgttgca
ccgcgtgcccggttgatcctgctgggtgacaaggaccaattggccgcggtcgacgcgggg
gcagtgttcgccgaactgagtgcacatccatgctatgtcgggcagcgcgccgagcgtatc
gcgcaggcgcttggctgcacggtcgatacattgcgcaacgcgctcgccgcgcatgttcgc
ggtggcctgccccaattgcagcctgctaccttggggcaggctgctactccgacgcggctt
accgcatccgcaccgcctgccgcgccggccccgccctcagcgtctgcacagcgcgatctg
ttcgccgacgacaatccggcggttggggcagatatcgtcgagccagcgccgaacgacacg
gcacgtgcggcagacggtgcacagcctgctgcgctcgccaattgcgtcgtgtggttgcag
accaactatcggttcggcctcgattccccgatcgggcagctgtccagtgcaattcgcgac
ggctcgcctgcggacgcgctcggcgtgctcgatgcagcagacgatcgcgcgcccgcacac
ttcatcgatgacggcgggccggcaatcggacacgcggcacgcgactatatcgcgcggggt
ttcgcacgctatgcaaatctgctggccgggatgctgcagcggtgtgagtcacaggccgct
gcgctgttcgatgcgctcaacgcattccgtgtgctgtgcgcggttcgcgctggcccgcat
ggcgtcgatgcgttgaacgagtggatcagcgctgaactgcgtcgggttgcccgcttgccg
cttgcaccggccgcccggtggttcgctggccgtccggtcatcgtcacgcgcaacgactat
gcactcggcctgttcaatggcgacatcggcatcgcgctgccggccggcgacggcacgctg
cgggtggtcttcgaacagggtgccgggcagcgccggagcgtgtcgcccgcgatgctgccg
tcgcacgagacggcattcgcgctcacggtccacaaatcacagggttcggaattcgaacgg
gctgcgctggtgttgccgcctacgtttagccgggcgttgtcgcgagagttgatttacacg
gctgtgacccgcgcgcgggctcaaatcacgattatcggcacgcgtgcggtgttggcacag
gccatcggcacgccgacccgccgcgataccggactgtcggcacggttacgatacgctgag
gcgcgtgcacggcgcgaaacagcctcatcacgataa
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