Mycetohabitans rhizoxinica: RBRH_03399
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Entry
RBRH_03399 CDS
T01355
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brh
Mycetohabitans rhizoxinica
Pathway
brh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBRH_03399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brh03400
]
RBRH_03399
Enzymes [BR:
brh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBRH_03399
DNA repair and recombination proteins [BR:
brh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RBRH_03399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CBW75220
UniProt:
E5ARI8
LinkDB
All DBs
Position
1545108..1548605
Genome browser
AA seq
1165 aa
AA seq
DB search
MPDYSATLPDSPPAPFACPVPFIKEGQRYAFDGASGSADALAIARYHLAYRDRMPMLALI
CASAVDAQRLQQEIGCFAPDVRVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCD
ILVVPATTALYRMPPATFMAAYTFEFKQGQRLDEAKLKSRLTLAGYEHVSQVVRPGEYCV
RGSLIDLFPMGSSLPYRIDLFDDQIDSIRAFDPDTQRSLYPVHDVRLLPGREFPFDEAAR
TAFRSRWRAEFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFEDTATLFHYLPEHTHLVLV
GDIEASIRQFSAETKQRHAFLSHERERPILAPARLFLSEQDFFTLAKPFARLSLGTKSSD
DAQRWSMPLPSLAIDRHAQDPVDALRRYLGTAGHRVLLVAESAGRRETLSQLLVDHHLRA
SLFDSFDAFVQGDAPFGLAVAPVASGFVLPAEHIALVTETELYGPLARRASRRRQEQASD
VDSMVRDLSELKVGDPVVHSQHGVGRYMGLVTMDLGEGDTEFLHLAYQGDSKLYVPVSQL
HVISRYGGADPDSAPLHALGSGQWEKAKRRAAQQIRDTAAELLNLYARRAARQGHAFALD
PRDYVRFAESFGFDETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAV
LGGKQVALLSPTTLLAEQHVQTFTDRFADWPVRIAELSRFKSTKEVNAAIQAINDGNVDI
VIGTHKLLSADVRFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMA
LEGLRDFSVIATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVESIDSRR
AALEALVPEARIAVAHGQMHERDLERVMRDFVAQRANVLLCTTIIETGIDVPSANTILIH
RADKFGLAQLHQLRGRVGRSHHQAYAYLLVNDPQSLSRQAQRRLEAIQQMEELGAGFYLA
MHDLEIRGTGEVLGEKQSGDIQEIGFQLYTDMLNDAVRALKDGREPDLNAPLAATTEINL
HMPAILPADYCSDVQERLSLYKRLANCEAGEAIDGIHEELIDRFGKLPVQAQALIETHRL
RLAAKPLGIIKIDAAESAIGLQFVPNPPIDAMRIIEMVQKHRHIKLAGQDKLRIELHSPD
LASRIATVKETLRALGAPGKQRTNA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgcccgattattccgctaccctgcccgattcaccgcccgccccgttcgcctgccccgtt
ccattcatcaaggagggccagcgctatgcattcgatggcgcctcaggatccgccgatgcg
ctggcgattgcgcgctaccatttagcgtatcgcgaccgcatgccgatgcttgcgctgatc
tgcgcaagcgcggtcgatgcgcagcgcctgcagcaggaaatcggctgcttcgcgcccgac
gtgcgcgtgcggcttctacccgactgggaaaccctaccgtacgataccttctcgccgcat
caggacctggtgtcggagcgtctcgccacgctgcacgacctgggcgaaggccgctgcgac
atcctggtcgtgccggccacgaccgcattgtatcggatgccgccggccacgttcatggcc
gcgtacaccttcgaattcaagcaaggccagcggctggacgaagccaagctcaagtcacgg
ctcacgctggccggctacgagcacgtgagccaggtcgtgcgtccgggcgaatactgcgtg
cgcggctcgctgatcgatttgttcccaatgggctcgtcgctgccgtaccggatcgacctg
ttcgacgaccagattgattcgattcgcgcgttcgatcccgatacgcagcgcagtctttac
ccggtgcacgacgtacgcctgctgccgggacgcgagttcccgttcgacgaggctgcgcgc
acggcgtttcgcagtcgatggcgcgccgaattcgaaggcgatccgtcacgcgcgccgatc
tataaggacatcggcaatggcgtgccgtcggcgggtatcgaatactacctgccactgttc
ttcgaggacaccgcgacgctgttccactatctgcccgagcacacacatttggtactagtc
ggcgatatcgaggcgtcgatccggcagttcagcgccgagacaaagcaacggcacgcgttt
ctgtcgcatgagcgcgagcgtccgattctagcgcctgcgcgactgttcctatccgagcag
gacttcttcacattggccaagccgtttgcgcggctctcgctcggcacgaaatcctcggac
gacgcccagcgctggtcgatgccgctgccctcgctggcaatcgaccggcacgcgcaggat
ccagttgacgcactgcgccgctatctcggcacggcaggccatcgggttctgctcgtcgcg
gagtcagccggacgccgcgagaccctctctcaattgctcgtcgatcaccatctgcgagcg
tcgctgttcgattcgttcgacgcgttcgtacaaggcgacgcgccgtttgggttagccgtc
gcgcccgttgcatccggcttcgtgctaccggccgagcatattgcgctggtcaccgaaacc
gagctgtacgggccgcttgcacgccgtgccagccggagacgccaggaacaggccagcgac
gtcgattcgatggtgcgcgatctgtctgagctgaaggtcggcgaccctgtcgttcacagc
cagcacggtgtcggacggtacatgggcctggtgacgatggacttaggcgaaggcgacacc
gagttcctgcacttggcgtatcagggcgacagcaagctgtacgtgccggtgtcgcagttg
cacgtgatctctcgctacggcggcgccgatccggacagcgcaccgctgcacgcgctcggc
tcgggccaatgggaaaaagccaagcggcgcgccgcccagcagatccgcgataccgcagca
gagctgctgaacctatatgcgcgccgcgcagcgcgccagggccatgcgttcgcgctggac
ccgcgcgactacgtgcgctttgcagaaagctttggtttcgacgagacgccggaccaggcc
gccgccatcgccgcggtgatcggcgatatgaccagtggcaagccaatggaccggctggtg
tgcggcgacgtcgggttcggcaagaccgaagtggcgctgcgcgcagccttcatcgcggtg
ctcggcggcaagcaggtggcgttgttgtcgccgacgacgctgctggccgagcagcacgtg
cagaccttcactgaccgttttgccgactggccggtgcgcatcgccgagttatcgcgcttc
aagtccaccaaggaggtcaatgccgcgatccaggcgatcaacgacggcaatgtcgacatt
gtgatcggcacccacaagctgctgtccgctgatgtgcgcttcaagcgcctggggctcgtg
attatcgacgaggagcaccgcttcggcgtgcggcaaaaagaagccctcaaggcgctgcgc
gcggaagtggacgtgctgacattgaccgctacgccgatccctcgcacgctgggcatggcg
ctggaagggttgcgggacttctcggtgatcgccactgcaccgcaaaagcgcctggcgatc
aagacctttgtgcggcgcgaggaagacagcgtgatccgcgaggcgatgttgcgcgagctt
aagcgcggtggccaggtttactttctgcataacgaggtcgagtcgatcgacagccgccgc
gcggcgctcgaagcgctggtgcccgaagcccgcatcgcggtggcgcacggccagatgcac
gagcgcgatctcgaacgcgtgatgcgcgacttcgtcgcgcaacgggccaacgtgctgctg
tgcacgacaatcattgaaaccgggatcgacgtgccgagcgccaacacgatcctcattcat
cgcgccgataaatttggcctggcccagctgcaccagttgcggggccgtgtcggtcgctcc
catcaccaagcgtacgcctacttgctggtcaacgacccgcagtcgctgagccggcaggcg
cagcgccgcctcgaggcgattcagcaaatggaggagctgggggccggcttttatctcgcg
atgcatgatctggagatccgcggcaccggggaggtgctgggcgagaagcagtcaggcgac
atccaggaaattggcttccaactctataccgatatgctcaatgacgccgtgcgcgcgtta
aaggatggccgcgagccggacttgaacgcgccgctggccgccaccaccgagatcaaccta
catatgccggcaatcctgccggccgattattgcagcgacgtgcaggagcgcctgtcactg
tacaagcgcctggctaattgcgaagcaggcgaggccatcgacggcatccatgaagagctg
atcgaccgcttcggcaagctgccggtacaggcgcaggcgctgattgaaacgcatcgactg
cggctggccgccaagccgctaggcattatcaagatcgacgcggcggaaagcgcgattggg
ctgcaattcgtcccgaatccaccgatcgacgcgatgcgcatcatcgaaatggtgcaaaag
caccggcacattaagctggcggggcaagacaagttgcggatcgagttgcacagtcctgac
ctggcgagccggatcgcgacggttaaggaaacgctgcgggcgttaggcgcaccgggcaag
cagcggaccaacgcatga
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