Buceros rhinoceros silvestris (rhinoceros hornbill): 104490721
Help
Entry
104490721 CDS
T08612
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
brhi
Buceros rhinoceros silvestris (rhinoceros hornbill)
Pathway
brhi03013
Nucleocytoplasmic transport
brhi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brhi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104490721 (UPF1)
03015 mRNA surveillance pathway
104490721 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brhi03019
]
104490721 (UPF1)
Enzymes [BR:
brhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104490721 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104490721 (UPF1)
Messenger RNA biogenesis [BR:
brhi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104490721 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104490721 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104490721
NCBI-ProteinID:
XP_010131351
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKP
RKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHV
TAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLP
NSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
gttaatggacctgatggcattctgcagaacggagctgtcgatgacaacgtggctaaaacc
agccagcttctggcagagttgaactttgaagaagacgaagaagatacctattacacaaag
gatcttcctgtgcatgcgtgcagttactgtggtatccatgaccctgcttgtgtggtttat
tgtaacaccagcaaaaagtggttctgtaacgggcgtggaaatacatctggcagccacatc
gttaatcatcttgtgagagcgaagtgcaaagaggtgactctccacaaagatgggcctctg
ggagagaccgtcttggaatgttacaactgcggatgtcgtaacgtctttctccttggcttt
attccagctaaggccgactctgtggtggttttgctgtgcaggcagccatgtgccagccag
agcagtttaaaggatattaattgggacagttcacagtggcagcctcttatccaagaccgc
tgtttcctttcctggctggtaaagattccatctgagcaggagcagctgagagcacgacag
atcacagctcagcagatcaacaaactggaagagctgtggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgtggatgaagaacctcagcacgtcctgctcagatat
gaagatgcttatcagtaccaaaatatatttggtcccttagtcaagctggaggcagactat
gacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaagagaattgcttacttcactttgccaaagaccgattcagatatgcgtctt
atgcaaggagacgagatctgcttgaggtataaaggagacctggcccctttatggaaagga
attggtcacgtaatcaaagttcctgataattatggtgacgagatagccattgagctgagg
agcagcgttggagcgcctgtggaggtcactcataacttccaggtggattttgtgtggaag
tctacttcatttgacaggatgcagagtgctttaaaaacctttgctgtggatgagacctca
gtgtctgggtacatctatcacaagctgttaggtcatgaggtagaagatgtaattattaaa
tgccagttgccaaagcgctttacagcccaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtacc
ggaaaaacagtgacatcagccacaatcgtctatcatctggccagacagggcaatggacct
gtgttagtctgtgctccaagtaacatagctgtagatcagctgaccgagaagatccatcag
actggactgaaggtggttcgcctgtgtgctaaaagtcgcgaggcaattgactctccggtg
tccttcttggcactgcataaccagatccgaaacatggacagcatgccagagcttcagaaa
ctgcagcagctgaaagatgagactggagagctgtcatctgcagatgagaaacgttaccgg
gcgctgaaacgaacagcagagcgtgaattgcttatgaatgcagatgtgatctgctgcacc
tgcgtgggagccggtgatccgagacttgcgaagatgcagttccgctccattctgatcgat
gaaagcacccaggcgactgagccggagtgcatggtgcccgtcgtcctgggagcaaaacag
cttattctcgtgggtgaccactgccagcttggccctgttgtgatgtgtaaaaaggcagcg
aaggccggcctgtcgcagtctctcttcgagaggctggtggtgctgggcatccgtcccatc
cgcctgcaggtccagtaccgcatgcacccggccctcagcgcctttccatccaatatcttc
tacgagggctcgctccagaatggggtcactgcagcggaccgggtgaaaaaagggtttgat
ttccagtggccacagccagataagccaatgttcttctacgttacgcaaggacaggaagaa
attgcaagctcaggcacctcttacttaaacaggacggaagctgccaatgtggagaagata
actacgaagctattgaaggcgggtgccaaacccgatcagattggcattattactccttac
gaaggacagcgctcctatctggtgcagtacatgcagttcagtggttccctgcatacaaag
ctctaccaggaagtggaaattgcaagcgtggatgccttccagggacgcgagaaggacttt
attatcctgtcttgtgtgagggccaacgaacaccaaggaatagggtttctgaatgacccc
aggcgtcttaacgtagctcttacaagagcaaggtatggagtaattattgttgggaacccg
aaagcgctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaag
gttctggtggaaggaccgctgaataacctccgggaaagccttatgcagttcagcaagccc
cggaaactggtcaataccatcaacccaggtgcccgtttcatgacgactgccatgtatgat
gcacgtgaggcgattattcccggctctgtctacgaccggagcagccaagggcgcccatcc
aacatgtacttccaaacccacgaccagatcgggatgatcagcgctggccccagccacgtc
actgccatgaacattcccatccctttcaacctcgtgatgccaccgatgccgccgccggga
tactttggccaggcgaacggaccagctgcaggacgtggagcgccaaagggaaagactggt
cgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttcca
aacagtcaagcgagccaagatgtggtgtcccagcctttctcgcagggtcccctgactcag
gggtatatctccatgagccagccatcacagatgagtcagcctgggctctcccaacccgag
ttatcccaggacagttaccttggtgatgagtttaaatctcagattgatgtggcgctgtca
caggactctacttaccagggtgaacgtgcatatcaacatggtggagtgacgggactgtca
cagtattag
DBGET
integrated database retrieval system
