KEGG   Brevibacterium sp. CS2: FDF13_02665
Entry
FDF13_02665       CDS       T05958                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bri  Brevibacterium sp. CS2
Pathway
bri03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bri00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FDF13_02665
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bri03400]
    FDF13_02665
Enzymes [BR:bri01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FDF13_02665
DNA repair and recombination proteins [BR:bri03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FDF13_02665
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Other DBs
NCBI-ProteinID: QCP04342
UniProt: A0A4P8HA91
LinkDB
Position
complement(612865..615309)
AA seq 814 aa
MAKRQKVTVDGRQLTLSNLDKVLYPSAGTTKADVLTYLSTIAPVLVPQAAGRPVTRKHWP
DGVGTEAEPRAPFFRKDLEDSAPGWVPREDLEHSDHTNTYPLIDGPSVLAWLGQVAALEI
HVPQWRFDADGVPQNPDRLVLDLDPGPGLGLAECAEVARLCRDILTDLGLESVPVTSGSK
GIHLYAGLDGASTSEQVSEVAHELARSLEADHPDLVVSRMKKSLRRGRVLVDWSQNNSSK
TTVCPYSLRGRARPFVAAPRTWDELDDPGLAQLDHRQVMDRVADGLDPMADLGRDPRADG
TAGALDAYRARRDAARTPEPVPEAAPHGSARGGSRGTGEEEAGRTAGSAGTEPIFVIQEH
HASRLHFDTRYERDGVLVSWAVPKGPPLEPGVNRLAVQTEDHPLEYARFEGRIPKGEYGA
GEVTIWDSGTIAIEKWRAGEEIIAVLDGRPDGGLGGVPRRYVLVHTDGDSWLMQLMKDQP
AAAAPFTDDLPAPMLATAGSPADLDADDEWAFEGKWDGYRAIAGAREDGVELRSRNGVDL
LRTFPELAALAELVPVGTVVDGEIVALDSSSRPSFGLLQTRGKLTRPRDVERAMEDTPAY
LFVFDLLRSPEHGSLLTRPYSERRALLEELLGGDGRSGSDRIQVPADLGVPVDAAIDISR
ELGLEGIVAKRTDDRYLPGRRSRGWIKIKHDTHQEAVVIGYRTGKGSRSSTLGSLLLAVP
EDGELAYAGRVGSGFAEAELADLRARLDRITRRTPAVGDVPAADSRDATWVSAKLVGEVA
HSGRTSEGRLRQPIWRGLRPDKTPDEVRWESPVE
NT seq 2445 nt   +upstreamnt  +downstreamnt
atggcgaagcggcagaaggtcacggtcgacggccggcagctgacgctgagcaacctcgac
aaggtgctctacccgtccgcggggaccacgaaggccgacgtcctgacctacctcagcacc
atcgcgccggtgctcgtcccgcaggcggccgggcgccccgtcacgcgcaagcactggccg
gacggggtcggcaccgaggccgagccccgggcaccgttcttccgcaaggacctcgaggac
tccgcccccggctgggtgccgcgggaggacctcgagcactccgaccacacgaacacctac
ccgctcatcgacgggccctcagtgctcgcctggctggggcaggtcgcggccctcgagatc
cacgtcccgcaatggcggttcgacgcggacggcgtcccgcagaatcccgaccggctggtg
ctcgacctcgacccgggcccggggctcggactcgccgagtgcgccgaggtcgcccgcctg
tgccgggacatcctcaccgacctcggtctcgagtcggtgccggtgacctccgggtcgaag
ggcatccacctctacgccgggctcgacggcgcctcgacctcggagcaggtgtccgaggtg
gcccacgagctcgcccggtccctcgaggccgatcaccccgacctcgtggtgagccggatg
aagaagtcgctgcgccgcggcagggtgctcgtcgactggagccagaacaattcgagcaag
accaccgtctgcccctactcgctgcgcggccgggcccgtccgttcgtcgccgcgccgcgc
acctgggacgagctcgacgacccgggcctggcgcagctcgaccaccgccaggtgatggat
cgggtggccgacggcctcgacccgatggccgatctcgggcgggacccgcgagcggacggc
acggccggtgcgctggacgcctaccgggccagacgggatgccgcccggacgccggagccg
gtgccggaggccgcaccgcacgggtccgcgcggggcggctccagggggacgggcgaggag
gaagccgggcggacggcgggctccgcgggcaccgagccgatcttcgtcatccaggagcac
cacgccagccgcctccacttcgacacccgctacgagcgcgacggggtgctcgtgtcctgg
gcggtgcccaagggcccgcccctggagccgggcgtcaaccggctggcggtgcagacggag
gaccacccgctcgagtacgcgcgcttcgaggggaggatcccgaagggggaatacggcgcc
ggtgaggtgacgatctgggactcgggcacgatcgccatcgagaagtggcgggcgggcgag
gagatcatcgccgtgctcgacgggcgcccggacggcgggctcggaggagtgccccgacgc
tacgtcctcgtccataccgacggcgacagctggctcatgcagctgatgaaggaccagccg
gcggccgcggcacccttcaccgacgacctcccggccccgatgctcgcgacggcgggatcg
ccggcggatctcgacgccgacgacgaatgggcgttcgaggggaagtgggacggctatcgg
gcgatcgccggggcccgggaggacggggtcgagctccgcagccgcaacggcgtcgacctg
ctccgcaccttccccgaactcgccgcgctcgccgagctcgtgcccgtcggcacggtggtc
gacggtgagatcgtcgccctcgacagcagcagccggccgagcttcgggctgctccagacc
cgcgggaagctcacccgtccccgcgatgtcgagcgggcgatggaggacaccccggcctac
ctcttcgtcttcgacctcctccgctcaccggagcacggcagtctgctcacccgcccgtac
tccgaacgccgcgcactcctcgaggagctgctgggcggggacgggcggtcgggcagcgac
cgcatccaggtgcccgccgacctcggcgtgccggtcgacgccgcgatcgacatcagtcgt
gagctcggcctcgaggggatcgtcgccaagcggacggacgaccgctacctgcccggccgg
cggtcccgcggctggatcaagatcaagcacgacacccaccaggaggcggtcgtcatcgga
taccggacggggaaggggagccgctcctcgacactcggctccctgctcctcgcggtgccc
gaggacggtgagctcgcatacgcggggcgcgtcggcagcggattcgccgaagccgagctc
gccgacctgcgcgcacggctcgaccggatcacgcgcaggaccccggctgtcggcgatgtc
cccgcggcggactcccgcgatgcgacgtgggtgagcgcgaagctcgtcggcgaggtcgcg
cactccggccgcacatccgaggggcggctgcggcagccgatctggcgcgggctgcgcccg
gacaagaccccggacgaagtgcgctgggagtcgccggtggaatga

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