Brevibacterium sp. CS2: FDF13_02665
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Entry
FDF13_02665 CDS
T05958
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bri
Brevibacterium sp. CS2
Pathway
bri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FDF13_02665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bri03400
]
FDF13_02665
Enzymes [BR:
bri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FDF13_02665
DNA repair and recombination proteins [BR:
bri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FDF13_02665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCP04342
UniProt:
A0A4P8HA91
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All DBs
Position
complement(612865..615309)
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AA seq
814 aa
AA seq
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MAKRQKVTVDGRQLTLSNLDKVLYPSAGTTKADVLTYLSTIAPVLVPQAAGRPVTRKHWP
DGVGTEAEPRAPFFRKDLEDSAPGWVPREDLEHSDHTNTYPLIDGPSVLAWLGQVAALEI
HVPQWRFDADGVPQNPDRLVLDLDPGPGLGLAECAEVARLCRDILTDLGLESVPVTSGSK
GIHLYAGLDGASTSEQVSEVAHELARSLEADHPDLVVSRMKKSLRRGRVLVDWSQNNSSK
TTVCPYSLRGRARPFVAAPRTWDELDDPGLAQLDHRQVMDRVADGLDPMADLGRDPRADG
TAGALDAYRARRDAARTPEPVPEAAPHGSARGGSRGTGEEEAGRTAGSAGTEPIFVIQEH
HASRLHFDTRYERDGVLVSWAVPKGPPLEPGVNRLAVQTEDHPLEYARFEGRIPKGEYGA
GEVTIWDSGTIAIEKWRAGEEIIAVLDGRPDGGLGGVPRRYVLVHTDGDSWLMQLMKDQP
AAAAPFTDDLPAPMLATAGSPADLDADDEWAFEGKWDGYRAIAGAREDGVELRSRNGVDL
LRTFPELAALAELVPVGTVVDGEIVALDSSSRPSFGLLQTRGKLTRPRDVERAMEDTPAY
LFVFDLLRSPEHGSLLTRPYSERRALLEELLGGDGRSGSDRIQVPADLGVPVDAAIDISR
ELGLEGIVAKRTDDRYLPGRRSRGWIKIKHDTHQEAVVIGYRTGKGSRSSTLGSLLLAVP
EDGELAYAGRVGSGFAEAELADLRARLDRITRRTPAVGDVPAADSRDATWVSAKLVGEVA
HSGRTSEGRLRQPIWRGLRPDKTPDEVRWESPVE
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcggcagaaggtcacggtcgacggccggcagctgacgctgagcaacctcgac
aaggtgctctacccgtccgcggggaccacgaaggccgacgtcctgacctacctcagcacc
atcgcgccggtgctcgtcccgcaggcggccgggcgccccgtcacgcgcaagcactggccg
gacggggtcggcaccgaggccgagccccgggcaccgttcttccgcaaggacctcgaggac
tccgcccccggctgggtgccgcgggaggacctcgagcactccgaccacacgaacacctac
ccgctcatcgacgggccctcagtgctcgcctggctggggcaggtcgcggccctcgagatc
cacgtcccgcaatggcggttcgacgcggacggcgtcccgcagaatcccgaccggctggtg
ctcgacctcgacccgggcccggggctcggactcgccgagtgcgccgaggtcgcccgcctg
tgccgggacatcctcaccgacctcggtctcgagtcggtgccggtgacctccgggtcgaag
ggcatccacctctacgccgggctcgacggcgcctcgacctcggagcaggtgtccgaggtg
gcccacgagctcgcccggtccctcgaggccgatcaccccgacctcgtggtgagccggatg
aagaagtcgctgcgccgcggcagggtgctcgtcgactggagccagaacaattcgagcaag
accaccgtctgcccctactcgctgcgcggccgggcccgtccgttcgtcgccgcgccgcgc
acctgggacgagctcgacgacccgggcctggcgcagctcgaccaccgccaggtgatggat
cgggtggccgacggcctcgacccgatggccgatctcgggcgggacccgcgagcggacggc
acggccggtgcgctggacgcctaccgggccagacgggatgccgcccggacgccggagccg
gtgccggaggccgcaccgcacgggtccgcgcggggcggctccagggggacgggcgaggag
gaagccgggcggacggcgggctccgcgggcaccgagccgatcttcgtcatccaggagcac
cacgccagccgcctccacttcgacacccgctacgagcgcgacggggtgctcgtgtcctgg
gcggtgcccaagggcccgcccctggagccgggcgtcaaccggctggcggtgcagacggag
gaccacccgctcgagtacgcgcgcttcgaggggaggatcccgaagggggaatacggcgcc
ggtgaggtgacgatctgggactcgggcacgatcgccatcgagaagtggcgggcgggcgag
gagatcatcgccgtgctcgacgggcgcccggacggcgggctcggaggagtgccccgacgc
tacgtcctcgtccataccgacggcgacagctggctcatgcagctgatgaaggaccagccg
gcggccgcggcacccttcaccgacgacctcccggccccgatgctcgcgacggcgggatcg
ccggcggatctcgacgccgacgacgaatgggcgttcgaggggaagtgggacggctatcgg
gcgatcgccggggcccgggaggacggggtcgagctccgcagccgcaacggcgtcgacctg
ctccgcaccttccccgaactcgccgcgctcgccgagctcgtgcccgtcggcacggtggtc
gacggtgagatcgtcgccctcgacagcagcagccggccgagcttcgggctgctccagacc
cgcgggaagctcacccgtccccgcgatgtcgagcgggcgatggaggacaccccggcctac
ctcttcgtcttcgacctcctccgctcaccggagcacggcagtctgctcacccgcccgtac
tccgaacgccgcgcactcctcgaggagctgctgggcggggacgggcggtcgggcagcgac
cgcatccaggtgcccgccgacctcggcgtgccggtcgacgccgcgatcgacatcagtcgt
gagctcggcctcgaggggatcgtcgccaagcggacggacgaccgctacctgcccggccgg
cggtcccgcggctggatcaagatcaagcacgacacccaccaggaggcggtcgtcatcgga
taccggacggggaaggggagccgctcctcgacactcggctccctgctcctcgcggtgccc
gaggacggtgagctcgcatacgcggggcgcgtcggcagcggattcgccgaagccgagctc
gccgacctgcgcgcacggctcgaccggatcacgcgcaggaccccggctgtcggcgatgtc
cccgcggcggactcccgcgatgcgacgtgggtgagcgcgaagctcgtcggcgaggtcgcg
cactccggccgcacatccgaggggcggctgcggcagccgatctggcgcgggctgcgcccg
gacaagaccccggacgaagtgcgctgggagtcgccggtggaatga
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