Brevibacterium sp. CS2: FDF13_07770
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Entry
FDF13_07770 CDS
T05958
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bri
Brevibacterium sp. CS2
Pathway
bri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FDF13_07770 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bri03400
]
FDF13_07770 (mfd)
Enzymes [BR:
bri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FDF13_07770 (mfd)
DNA repair and recombination proteins [BR:
bri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FDF13_07770 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCP05197
UniProt:
A0A4P8H887
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All DBs
Position
1753679..1757305
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AA seq
1208 aa
AA seq
DB search
MPLTGITTTLRAHPTFADAVSALADPSHRAGTINAVKGLWPALVADAAAAGTVLVVTATG
REAEELATALADHLAPDRVAVFPSWETLPHEKLSPRSDTVGRRLSVLRRLAHPRPDAPLS
VVIAPVRALLQPLVKGLGALTPVELATGDTVELSALAAQLSDLAYSRVDMVSRRGEYAVR
GGILDIFPPTEDHALRLEFFGDEIDEIRPFAVADQRSLPVAEGAEFRLWAPPCREVLLTS
AVRERARTLIPILPAAREMLEKIADGIAVEGMESLAPVLADGMEPLIACLPEHTRIVVTS
PEKVTARAEDLVATTAEFLAAAWTGASGGGEAPIDLSAASFRTLAQTREAAAAIGLPWWE
VGGFAVDSELVGDSEVVIDIDARAPRGYSGEVEAILADVRALTHASWQVYVLTEGKGPGT
RLVEVFTEAEVPAAFADDLAAPGTPGTVTVTTAAAYGGYVIESEKLAVLTEADVLGRAAA
ASTKDMRRLPARRRRNQVDPLDLSPGDFVVHEQHGVGRFVELVQRTSGRGEAARTREYLV
IEYAPSKRGQPGDRLYVPSDSLDQVTRYVGGESPSVNKMGGSDWSKTKARARKAVKEIAG
ELIRLYSARRATRGFAFSGDSPWQQELEDAFHYVETPDQLTTIDEVKADMEKEIPMDRLI
CGDVGYGKTEVAVRAAFKAIQDGKQVAVLVPTTLLVQQHLGTFAERYSGFPVSVGALSRF
QTPAESQKVKDDLAAGTLDVVIGTHRLLSGEVRFKDLGLVIIDEEQRFGVEHKETLKALR
TNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGRYEDRQVTAAIRREL
LREGQVFYIHNRVQDIERVAGHLAELVPEARIAVAHGKMSEARLEQVIVDFWEKRFDVLV
CTTIVETGIDIANANTLIVDRAERMGLSQLHQLRGRVGRGRERAYAYFLYPPDHMLTETA
HDRLQTLASHTELGAGMQVAMKDLEIRGAGNLLGGQQSGHIEGVGFDLYVRLVGEAVANF
RGDGPVEEPEMRVELPIDAHLPTDYVSHERLRLEAYRKLAAAAKEEEIAEVLAELTDRYG
PYPASVEVLADIARLRIRARASGVAEIVAQGNFIRFAPVELADSQLVRLKRLHPKSLVKP
AIRSILVPKPQAGTGFDKRDMTDTELIDWVTGFLDQILPAPDPVPAPDAAEVPAGTAEAS
AGTSAGTA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
gtgcctctgaccggaatcaccaccaccctgcgcgcccacccgaccttcgccgacgccgtc
tccgcgctcgccgacccgagccaccgggccggtaccatcaacgccgtcaagggcctgtgg
ccggcgctcgtcgccgacgccgcggccgccggcaccgtgctcgtcgtcaccgccaccggc
cgcgaggccgaagagctcgcgaccgcgctcgccgaccacctggcgcccgaccgggtggcc
gtgttcccgagctgggagaccctgccccacgagaagctctcgccgcgctccgacaccgtc
ggccgccgcctgtccgtgctgcggcggctcgcccacccgcgccccgacgcgccgctgtcc
gtggtcatcgctccggtccgtgcgctgctccagccgctcgtcaagggactcggggcgctc
acacccgtcgagctcgcgaccggtgacaccgtcgagctctccgcgctcgccgcgcagctg
tccgacctcgcgtactcgcgcgtggacatggtgtcccgccgcggggagtacgcggtgcgc
ggcggcatcctcgacatcttcccgccgacggaggaccacgcgctgcgcctcgagttcttc
ggcgacgagatcgacgagatccgccccttcgccgtcgccgaccagcgctccctgcccgtc
gccgagggtgccgagttccggctctgggccccgccctgccgcgaggtgctcctgacctcg
gcggtccgcgagcgggcccgcacgctcatcccgatcctgcccgcggcccgcgagatgctc
gagaagatcgccgacggcatcgcggtcgagggcatggagtcgctcgcccccgtgctcgcc
gacggcatggagccgctcatcgcctgcctgccggagcacacccggatcgtcgtcacctcc
ccggagaaggtcaccgcacgcgccgaggacctcgtcgccacgacggcggagttcctcgcc
gccgcctggaccggcgcttcgggcgggggcgaggcaccgatcgacctgtccgcggcgagc
ttccgcacgctcgcacagacccgcgaggccgccgccgcgatcggcctgccgtggtgggag
gtcggcgggttcgccgtcgactccgagctcgtcggcgactccgaggtcgtcatcgacatc
gacgcccgcgccccgcgcggctactccggcgaggtcgaggcgatcctcgccgacgtccgc
gccctcacccacgcgtcctggcaggtctacgtcctcaccgagggcaaggggcccgggacc
cggctcgtcgaggtgttcaccgaggccgaggtgcccgccgccttcgccgacgacctcgcc
gcccccggcaccccgggcacggtgacggtgacgaccgccgcggcgtacggcggctacgtc
atcgagtcggagaagctcgccgtgctcaccgaggccgacgtgctcggccgggcggcggcc
gcctcgacgaaggacatgcgccgcctgccggcccgccgccggcgcaaccaggtcgacccg
ctcgacctcagccccggggacttcgtcgtccacgagcagcacggcgtcggccgcttcgtc
gagctcgtgcagcgcacctcgggccgcggggaggccgcccgcacccgcgagtacctcgtc
atcgagtacgcgccgtccaagcgcggccagcccggggaccgcctctacgtgccctcggac
tccctcgaccaggtcacccgctacgtcggcggggagagcccgagcgtcaacaagatgggc
ggctcggactggtcgaagacgaaggcccgcgcccgcaaggcggtcaaggagatcgccggc
gagctcatccgcctctactccgcccgccgcgccacccgcggcttcgcgttctccggggac
tcgccctggcagcaggagctcgaggacgccttccactacgtcgagacccccgaccagctc
acgacgatcgacgaggtcaaggccgacatggagaaggagatcccgatggatcgcctgatc
tgcggcgacgtgggttacggcaagaccgaggtcgcggtgcgcgcggcgttcaaggcgatc
caggacggcaagcaggtcgccgtcctcgtgccgaccacgctgctcgtccagcagcacctc
gggaccttcgccgagcgctactccggcttccccgtgagcgtcggggcgctgtcgcgcttc
cagaccccggcggagagccagaaggtcaaggacgacctcgctgccggcaccctcgacgtc
gtcatcggcacccaccggctgctctccggcgaggtccggttcaaggacctcggcctcgtc
atcatcgacgaggagcagcggttcggcgtcgagcacaaggagaccctcaaggcgctgcgg
acgaacgtcgacgtgctcgcgatgagcgccaccccgatcccgcgcaccctcgagatggcc
gtcaccgggatccgcgagatgtcgacgctggcgaccccgccggaggagcgccacccagtc
ctcacctatgtgggccgctacgaggaccggcaggtcaccgccgcgatccggcgcgagctg
ctgcgcgagggccaggtgttctacatccacaaccgggtgcaggacatcgagcgggtcgcc
ggccacctcgccgagctcgtgcccgaggcgcggatcgccgtggcccacggcaagatgagc
gaggcgcgcctcgagcaggtcatcgtcgacttctgggagaagcgcttcgacgtgctcgtg
tgcacgacgatcgtcgagaccgggatcgacatcgcgaacgcgaacaccctcatcgtcgac
cgcgccgagcggatggggctgtcccagctccaccagctgcgcggccgggtgggccgcggc
cgcgagcgcgcctacgcctacttcctctacccgcccgaccacatgctcaccgagaccgcg
cacgaccggctgcagacgctcgcctcgcacaccgagctcggcgcgggcatgcaggtggcg
atgaaggacctcgagatccgcggtgcgggcaacctgctcggcggccagcagtccgggcac
atcgagggtgtgggcttcgacctctacgtccggctcgtcggcgaggcggtcgcgaacttc
cgcggcgacgggcccgtcgaggagccggagatgcgcgtcgagctgccgatcgacgcccac
ctgcccaccgactacgtgtcccacgagcggctccggctcgaggcctatcgcaagctcgcc
gccgcggcgaaggaggaggagatcgccgaggtgctcgccgagctcaccgaccgctacggc
ccctacccggcctccgtcgaggtgctcgccgacatcgcgcggctgcggatccgggcgcgg
gcgtccggggtcgcggagatcgtggcgcaggggaacttcatccgcttcgcccccgtcgag
ctcgccgactcccagctcgtccgcctcaagcgcctccacccgaagtcgctcgtcaaaccc
gcgatccgctcgatcctcgtgcccaagccgcaggccggcaccgggttcgacaagcgggac
atgaccgataccgagctcatcgactgggtcaccggcttcctcgaccagatcctccccgcc
ccggacccggtacccgccccggatgcggccgaggtgcccgccgggaccgccgaggcgtct
gccgggacctccgccgggacggcctga
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