Bradyrhizobium sp. SK17: CWS35_34490
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Entry
CWS35_34490 CDS
T05325
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brk
Bradyrhizobium sp. SK17
Pathway
brk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CWS35_34490 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brk03400
]
CWS35_34490 (ligD)
Enzymes [BR:
brk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CWS35_34490 (ligD)
DNA repair and recombination proteins [BR:
brk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CWS35_34490 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AUD00016
UniProt:
A0A2K8YQV5
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All DBs
Position
complement(7426717..7429344)
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AA seq
875 aa
AA seq
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MRNLTTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDFRLEFDGVFKSWAV
TRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEDQYGGGTVQLWDRGTWDSDDPERGFKK
GDLKFTLHGEKLHGSWVLVRMKSDRFGGKRTNWLLIKHRDEYAVDGDGEAVLGEDRSVAS
GRSMAQIAAGKGRAPKPFMLAKGNGKATADAVWQSNHGMAADARAKTKAPAPKAKLKAQL
KERPRAKPKQVAEMPDFVSPQLCAAVESPPNGAGWGHEIKFDGYRVQLRVEDGEADVKTR
KGLDWSDKFAAIVEEACKLPDALIDGEIVALDENGTPHFSTLQAALSDGKTEQLIFYAFD
LLFAGTEDIRPLPLAERKAQLQALLAARKGKNPLIRYVEHFEESGDAVLESARKLGLEGI
VSKRLDGAYRSGRSDDWTKAKIRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGIVG
TGFGQDTVRRIMPALKEAASDTSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIR
QAAFKGLRQDKPAHEVEAERPVVTRVVKPMAKGKASSEVMGVAISHPDKALWPDAGDGEP
VTKLDLASYFEAVGEWMIGYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKLAKVSG
DRKPYLQIDQIEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFSDVVDAA
KEMRQRLTAVGLESFCKTTGGKGLHVVAPLQSGARDKVTWKEAKAFAQGICQWMAQDDPE
RYLINMSKAKRTGKIFLDYLRNDRLATAVAVVSPRARPGATVSMPLTWTQVRGDLDPAKY
TVRSVPALLAKTKAWDGYDDAASSIKAAIKKLAAQ
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
ctgagaaacctcaccacctatcgcaagaagcgcgacttcgagaagaccagtgagccgtcg
ggcgacgtcaaggtcgcaccgagcaagcagcgccgcttcgtgatccagaagcatgacgcg
acgcggctgcactatgatttcaggctggagttcgatggcgtcttcaaatcctgggcggtg
acgcgcgggccatcgctcgatccgcatgacaagcggctcgcggtcgaggtcgaggatcat
ccgctcgactatggcgatttcgaaggtacgatcccggaagaccagtatggcggcggcacc
gtgcagctgtgggatcgcggcacctgggactctgacgatcccgagcgcggcttcaagaag
ggcgacctgaagttcaccctgcatggcgagaagctgcacggcagctgggtgctggtgcga
atgaagagcgaccgcttcggcggcaagcgcaccaattggctattgatcaagcaccgggat
gaatatgccgtcgatggcgatggcgaagcggttctcggagaggatcgctcggttgcgtcg
ggccgttcgatggcgcagatcgcagccggcaagggccgggcgccgaagccgttcatgctg
gcgaagggcaacggcaaggccacagcggatgcggtctggcagtccaatcacggcatggcc
gcggacgcccgcgcgaagaccaaggcgccggcgccaaaggcaaagctgaaggcgcagttg
aaggagcggccgagggcgaaaccgaagcaggtggcggagatgcccgatttcgtctcgccg
cagctctgcgccgcggtcgagtctccgccgaatggcgccggctggggccacgagatcaag
ttcgacggctatcgcgtgcagcttcgcgtggaggatggcgaggctgacgtgaagacccgc
aagggactcgattggtcggacaagttcgccgcgatcgtggaggaggcctgcaagctgccg
gatgccttaatcgacggcgagatcgtcgcgctcgacgagaacggaacgccgcatttttca
acgttgcaggccgcgctctccgacggcaagaccgagcaactgatcttctacgcgttcgac
ctgctgtttgcaggcaccgaggatatccgcccgctgccgctcgccgagcgcaaggcgcag
ttgcaagcgttgctcgcggcgcgcaagggcaagaaccccttgatccgctatgtcgagcat
ttcgaggagagcggcgatgccgtgctggagtccgcgcgcaagctcgggttggaaggcatc
gtctccaagcggctcgacggggcctatcgctccggccgttccgacgactggaccaaggcc
aaaatccgcgccggccacgaggtggtgctcggcggctggaagaccaccaacggcaaattc
cgctcgctgatggccggcgtctatcgcggcgatcatctggcctttgtcggcatcgtcggc
accggctttggccaggataccgtccgccgcatcatgccggcgctgaaggaagctgcctcc
gacacgagcccgttcggcggcaaggatgcgccgaaaaagactcgcgacgtgcactggctg
aagcccgagctcgtcgccgagatcgagttcgcgggctggaccgacgccggcaatatccgc
caggccgccttcaaggggctgcggcaggacaagccggcgcatgaggtcgaggccgagcga
ccggtcgtaaccagagtggtgaagccgatggcgaaaggcaaggcgtcgagcgaggtgatg
ggcgtcgccatctcgcatcccgacaaggcgttgtggcccgatgccggcgacggcgagccg
gtgaccaagctcgacctcgccagctatttcgaggcggtcggcgaatggatgatcggctat
ctcaaggggcggccgtgctcgatcgtgcgcgcgcccgacggcatcaagggcgagacgttc
ttccagcgtcacgcgatggccggcacgtcgaagctgctgaagcttgccaaggtctcgggc
gaccgcaaaccgtatttgcagatcgaccagatcgaggggctggccgcggtcgcgcagctc
ggcggcctcgagctgcatccctggaattgcgcgcccgacgcctatgatacgccgggccgg
ctggtgttcgatctcgatccggcgcccgacgtggcgttctccgacgtcgtcgacgctgcc
aaggagatgcgccagcggctgaccgcggtcggcctcgaaagcttctgcaagaccaccggt
ggcaagggccttcatgtcgtcgcgccgttgcagtcgggggccagggacaaggtgacctgg
aaggaggccaaggccttcgcgcagggcatctgccaatggatggcgcaggatgacccggag
cgctatctgatcaacatgtccaaagccaagcgcaccggaaagatcttcctcgattatctg
cgcaacgaccggctcgcgacggcggtcgcggtggtctcgccgcgggcgcggccgggcgcg
acggtgtcgatgccgctgacctggacacaggtgcgtggcgatctcgatccggcaaagtac
acggtgaggtcggtgccggcgctgcttgcgaagaccaaggcctgggacggctatgacgat
gcggcgtcatcgatcaaggcggcgatcaagaagcttgctgcgcagtga
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