Brevundimonas sp. LM2: BZG35_02475
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Entry
BZG35_02475 CDS
T04750
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brl
Brevundimonas sp. LM2
Pathway
brl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BZG35_02475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brl03400
]
BZG35_02475
Enzymes [BR:
brl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BZG35_02475
DNA repair and recombination proteins [BR:
brl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BZG35_02475
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AQR60638
UniProt:
A0A1S6ERG9
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Position
complement(484241..486835)
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AA seq
864 aa
AA seq
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MKGELETYQAKRRFGETPEPEGRKTVGKASAPLRYLIQRHAATRLHYDFRIEVDGVLKSW
AVTKAPSRDTTVKRLAVEVEDHPLDYGDFEGTIPAGNYGGGTVQLWDTGTWSPRHPDTLE
EDWSKGSIKMDLEGERLKGGWALVRLKSDRGKPSKRNNWLLLKEKDEHAVPGEGDALAEI
DASITTGRSMAEIAAGKAAPNAKPSVRKPAAKAKAVARTEPALTAPPAFTPIQLCKVADH
PPSGSGWAHEIKFDGYRVQLATGGGQAKLYTRRGHDWSDKFPEIVADAAKWPDGVVDGEL
CALDADHMPDFSALQSAIPDGKTDDLVLFAFDLLFEGAEDLRGLPLSHRKARLTAHIDRM
PKAARGRIRYVDHFATTGQAVLESACRMDLEGVISKKLDAPYSAGRSTTWLKSKCRGGDE
VVIGGWSSEDGTRFRSLLVGVQDGEGLRYLGRVGTGYSQPLMKTLLPALKTAAADASPFA
GKGAPRGGREIHWLKPVLVAEIEHGGYTEAGSLRHAAYKGLRADKPAAEVTERPQAPSPT
GRAAPATDLHVPGEAAPLKGGSAKGKVVVAGVTLSNPDKILWPAVGDHPAITKAELARYY
EAVAARILPHVADRPTSIIRAPEGVGGETFFQRHAMPGSNPRLKLIDVHERKPYVGVVDV
GGLVAIGQSGGLELHPWGCMPGDPEVPDQITFDLDPDEGLDFDDVIAAAKVVRKKLEALG
LAPFVKTTGGKGLHVVVPIKTDARSRVTWDQNKALAKAVSEAIRVEAPDRFTTTLAKKAR
GGKIFLDYLRNGRMATAVAPWSPRARPGAGIAYPLNWTQVKTGLDPTAFTLRTYAALLKK
PDPWKDFRASAVSLRPALKAMKVG
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcgagctggagacctatcaggccaagcgccgcttcggcgagacgcccgagcct
gaaggcaggaagacggtcggcaaggcgtccgcccccctgcgctatctgatccagcgccat
gcggccacgcggctgcactacgacttccgcatcgaggtcgacggcgtgctgaagtcctgg
gccgtgaccaaggccccgtcgcgcgacaccacggtcaaaaggctggcggtggaggtcgag
gaccacccgctggactacggcgatttcgaaggcaccatccccgccggcaactatggcggc
ggcacggtccagctgtgggacaccggcacctggtcgccccggcatcccgatacgctggag
gaagactggtccaagggctcgatcaagatggacctcgagggcgagcggctgaagggcggc
tgggccctggtgcggctgaagtccgatcgcggcaagccgtccaaacgcaacaattggctg
ctgctgaaggagaaggacgaacacgccgtgcccggcgagggcgacgccctggccgagatc
gacgcctccatcaccaccggccgaagtatggccgagatcgccgccggcaaggcggccccg
aacgcgaagccaagcgtgcgcaagccggcggcaaaggccaaggcggtcgccaggaccgag
ccggccctgacggctcccccggccttcacccccatccagttgtgcaaggtggccgaccat
ccgccctccggatccggctgggcccacgagatcaagttcgacggctaccgcgtccagctc
gccaccggcgggggccaggcgaaactctacacccggcgcggccacgactggtccgacaag
tttccggagatcgtcgccgacgccgccaaatggccggacggcgtggtcgacggcgagctg
tgcgccctggacgccgatcacatgcccgacttctcggccctgcagtcggccattcccgac
ggcaagaccgacgacctggtcctgttcgccttcgacctgctgttcgagggtgccgaggac
ctgcgcggcctgcccctgtctcaccgcaaggcccggctgaccgcccatatcgaccgcatg
cccaaggcggcgcgggggcgcatccgctatgtcgaccatttcgccaccaccggccaggcc
gtgctggaaagcgcctgccggatggatctggaaggcgtcatctccaagaagctggacgcg
ccctactccgccggccgctccaccacctggctgaagtccaaatgccggggcggggacgag
gtggtgatcggcggctggtcctccgaggatggtacccggttccgctccctgctggtcggg
gtgcaggacggcgaaggcctgcgctatctcggccgggtcggcaccggctactcccagccc
ctgatgaagaccctgctgccggcgctcaagaccgccgccgccgacgccagccccttcgcc
ggcaagggggctccgcgcggcggccgcgagatccactggctgaagcccgtcctggtcgcc
gagatcgagcacggcggctataccgaggccggatcgctgcgccacgccgcctacaagggc
ctgcgcgccgacaagcccgccgccgaggtcaccgaacgccctcaggcgcccagcccgacg
ggcagggccgcccccgccaccgacctgcacgtccccggcgaggcggcgccgctgaaaggc
ggctcggccaagggcaaggtcgtcgtggccggggtcaccctgtccaaccccgacaagatc
ctgtggccggcggtcggcgaccacccggccatcaccaaggccgagctggcccgctattac
gaggccgtggccgcgcgcatcctgccccacgtcgccgaccgtccgacctcgatcatccgc
gcgcccgaaggcgtcggcggcgagaccttcttccagcgccacgccatgcccggctccaac
ccccggctcaagctgatcgatgtgcatgagcgcaaaccctatgtcggggtcgtcgacgtc
ggcggcctggtcgccatcggccagtcgggcgggctggagctgcacccctggggctgcatg
cccggcgaccccgaagtccccgaccagatcaccttcgacctcgaccccgacgagggtctg
gacttcgacgacgtgatcgccgccgccaaggtggtgcggaaaaagctggaggccctgggt
ctggcccccttcgtcaagaccaccggcggcaagggcctgcacgtcgtggtgccgatcaag
accgacgcccgcagccgcgtcacctgggaccagaacaaggccctcgccaaggccgtgtcc
gaggccatccgcgtcgaggctcccgaccggttcaccaccaccctggccaagaaggcgcgg
ggcgggaagatcttcctcgactatctgcgcaatggccgcatggccacggcggtcgccccc
tggtcgccgcgcgcccggccgggcgccggcatcgcctatccgctgaactggacccaggtg
aagaccggcctggatcccaccgccttcaccctgcgcacctatgccgccctgctgaagaag
cccgatccgtggaaggatttccgcgcctcggccgtcagcctgcggccggcgctgaaggcg
atgaaggtcggctag
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