Breoghania sp. L-A4: D1F64_11030
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Entry
D1F64_11030 CDS
T05594
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brn
Breoghania sp. L-A4
Pathway
brn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D1F64_11030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brn03400
]
D1F64_11030 (mfd)
Enzymes [BR:
brn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1F64_11030 (mfd)
DNA repair and recombination proteins [BR:
brn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D1F64_11030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_16
MFD_D3
UB2H
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXS40495
UniProt:
A0A346R1Y6
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All DBs
Position
2389570..2393124
Genome browser
AA seq
1184 aa
AA seq
DB search
MLTGPSPARFFWRRDLLKPLKGLFSRHANAVIASVPDGAEALVLGQLAESAARSGGPALV
YVARDGQRMAAAAEGVGFFAPGVDVIQLPAWDCLPYDRVSPNANVVARRLSVLATLAHGA
FGSRPVILMTTVNAATQLLPPREWTRTNAWAAQAGGQVDMGALVAWLETNGYLRTNTVRE
TGEYAVRGGILDLFAPGSAEPVRLDFFGDTLETIRPFDAETQRSTGKHARLDLVPMSEVV
LSEEAISRFRRNYVSRFGAATRDDALYQSVSEGRRYSGMEHWLPLFHEHLETLFDYVGDA
PVVLDPQVEDVVRERVDQVKDHCAARHDALERKGGADGVPYKPIDWPELYLSQDDWTTRI
ADRTSARFNPFAVPDGQGAVVDLEGRGGRTFAAERAAGDVNIFDAVINHIASLHKDGKRV
VIACWSEGARDRLSQVLNDHGLDRAAQVSSQAGAQALPQGVAALAILGLETGFELGKQVF
IGEQDILGDRLVRQRKRSKKGADFLTEVSSLSEGDLVVHVDHGIGRFVGLKTIDAAGAPH
DCLELQYHGGDKLYLPVENLELLTRYGSDDTEAQLDRLGGGAWQARKARMKQRIRDIAEG
LIKTAAARALRSATPITLPEGVYDEFAARFPYEETEDQLNAIDAVFSDLASGRPMDRLVC
GDVGFGKTEVALRAAFVAAMSGRQVAVVVPTTLLARQHFKTFQERFQGLPVRLAQASRLV
SAKELAATKKELTDGTLDIVIGTHALLGKGVDFKDLGLLIIDEEQHFGVKHKERLKELKS
DVHVLTLSATPIPRTMQMALTGVRGLSLIATPPVDRLAVRTFISPFDALVVREALLRERY
RGGQSFYVCPRVADLADTKAFLDENVPELKVAVAHGQIPPGELDDIMNAFYDGKYDVLLS
TTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKTRAYALFTVPANKTLTKQAE
RRLKVLQSLEALGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFALYQQMLEEAVAQLR
AGEDEVSDEQWSPQISVGTPVLIPDHYVPDLQLRLDLYRRLADLTDAQEIDGFGAELIDR
FGPLPGEVEHLLKIVFIKALCRQAHVEKIDAGPKGIVIAFRKNEFPNPAGLISYVTEQGV
LAKIRPDQKIVLSRDWPDAEERLKGAAVILSKLVKLAQISQKAA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccgggccgtcgcccgcacgattcttctggagacgagatttgctgaagccgctc
aagggcctgtttagccgtcatgccaatgcggtcattgcgtccgttcccgatggcgcggaa
gcgctggtgctcggtcagttggccgaatccgccgcgcgctccggtggcccggcgctcgtc
tacgtggcgcgcgacggccagcgcatggcagcggcggccgagggcgtgggcttcttcgcg
cccggcgtcgacgtcatccagcttcccgcctgggactgccttccctatgaccgcgtgtcg
ccgaacgccaatgtggtggcccgccggctgagcgtgctggcgaccctggcgcatggcgca
ttcggcagccgtcccgtgatcctgatgaccaccgtcaacgcagccacgcaactgctgccg
ccgcgcgaatggacccggaccaacgcctgggcggcgcaggcgggcggccaggtcgacatg
ggcgcgctcgtcgcctggctggagaccaacggctatctgcgcaccaacaccgtgcgcgag
accggcgaatacgccgtgcgcggcggcattctcgatctgttcgcgccgggatcggccgag
ccggtgcggctcgacttcttcggcgacacgctggagaccattcgtcctttcgacgccgaa
acccaacgctccacgggcaagcatgcccggctcgatctggtgccgatgagcgaggtggtg
ctctcggaggaggcgatttcgcgcttccgccgcaactatgtctcgcgttttggcgccgcg
acccgcgacgacgcgctgtatcagtcggtcagcgaaggccggcgctattccggcatggag
cactggctgccgctgttccatgagcatctggaaaccctgttcgattatgtgggcgacgcg
ccggtggtgcttgacccgcaggtcgaggacgtggtgcgcgagcgcgtcgatcaggtcaag
gatcactgcgccgcgcggcacgacgcgctggagcgcaagggcggcgcggacggcgtgccc
tacaagccgatcgattggccggaactctacctgtcgcaggacgactggacgacgcgcatc
gccgatcgcacctcggcgcgcttcaatcccttcgcggtgccggacgggcaaggcgcggtg
gtcgatctggaggggcgcggcggacgcaccttcgccgccgaacgcgccgccggcgacgtc
aacatcttcgacgcggtcatcaatcatatcgccagcctgcacaaggacggcaagcgggtg
gtcatcgcctgctggagcgagggcgcgcgcgaccggctgtcccaggtgctgaacgatcac
gggctggaccgcgccgcccaggtctcctcgcaggcgggagcccaggcgctgccgcagggc
gtggcggcgctggcgattctggggctggagaccggcttcgagctcggcaagcaggtgttc
atcggcgagcaggacattctcggcgatcgtctggtgcgccagcgcaagcgttcgaaaaag
ggcgcggatttcctcaccgaggtctccagcctgtccgaaggcgatctcgtggttcatgtc
gatcacggcatcggccgcttcgtcggcctgaagaccatcgacgccgccggcgcgccgcac
gattgcctggaactccagtatcacggcggcgacaagctctatctgccggtggaaaatctc
gagcttctgacccgctacggctcggacgacaccgaggcgcagctcgacaggcttggcggc
ggcgcctggcaggcgcgcaaggcgcgcatgaagcagcgcattcgcgacatcgccgagggt
ctgatcaagacggccgccgcgcgcgcgctgcgctcggccacgcccatcaccctgcccgag
ggcgtctacgacgaattcgccgcacggttcccctatgaggagaccgaggaccagctcaac
gccatcgacgctgtcttctccgatctcgcctccgggcggccgatggaccggctggtctgt
ggtgacgtcggcttcggcaagaccgaagtcgcgctgcgcgccgccttcgtcgccgccatg
tccggccgccaggtggccgtcgtcgtgcccacgacgctgctggcgcgccagcatttcaag
accttccaggagcgcttccagggtcttccggtacggctggcgcaggcctcgcggctggtc
tccgccaaggaactggcggcgaccaagaaggagctgacggacggcacgctggacatcgtc
atcggcacccacgcgctgctcggcaagggcgtcgatttcaaggatctcggcctgctgatc
atcgacgaggagcagcatttcggcgtcaagcacaaggagcggctcaaggagctgaagtcc
gacgtccacgttctgaccctgtccgcgacgccgatcccgcgcaccatgcagatggcgctc
accggcgtgcgcggcctgtcgctgatcgccaccccgccggtcgaccggcttgccgtgcgc
acctttatttcgcccttcgatgcgctggtggtgcgcgaggcgctgctgcgcgagcgctat
cgcggcggccagtccttctatgtctgcccccgcgtcgccgatctggcggacacaaaggca
ttcctcgatgagaacgtcccggagttgaaggtcgcggtggcgcacgggcagatcccgccg
ggcgaactcgacgacatcatgaacgccttctacgacggcaagtacgacgttcttctgtcg
accaccatcgtggaatccgggctcgatattcccacggccaacaccctgatcgtgcatcgc
gcggacatgtttggcctggcgcagctctatcagttgcgcggccgggtcgggcgctccaag
acccgcgcctacgcgctgttcaccgtccccgccaacaagacgctcaccaaacaggcggag
cggcggctcaaggtgctgcagtcactcgaggcgttgggcgcgggcttccagctcgcaagt
cacgatctcgatatccgcggcgcgggcaatctcctgggcgaggaacagtcgggccacatc
aaggaggtcggcttcgcgctctaccagcagatgctggaggaggcggtggcgcagctgcgc
gccggcgaggacgaggtgtccgatgagcagtggtcgccgcaaatttccgtcggcaccccg
gtgctcatccccgatcactatgttcccgacctgcagttgcggctcgatctctaccgccgc
ctggccgatctcaccgacgcccaggagatcgacggcttcggcgcggagctgatcgaccgt
ttcgggccgctgcccggcgaggtcgagcatctgctgaagatcgtcttcatcaaggcgctg
tgccgccaggcgcatgtggaaaagatcgacgcgggtcccaagggcatcgtcattgccttc
cgcaagaacgagttccccaatcccgccggtctcatcagctatgtgaccgagcagggcgtg
ctggcgaaaatccgtcccgaccagaagatcgtcctgtcgcgcgactggcccgacgctgag
gagcgtctcaagggcgcggcggtgatcctgtcgaagctcgtgaaactcgcgcaaataagc
cagaaggccgcctga
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