Bradyrhizobium sp. ORS 285: BRAD285_1482
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Entry
BRAD285_1482 CDS
T04956
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bro
Bradyrhizobium sp. ORS 285
Pathway
bro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRAD285_1482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bro03400
]
BRAD285_1482
Enzymes [BR:
bro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRAD285_1482
DNA repair and recombination proteins [BR:
bro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRAD285_1482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DUF5824
Motif
Other DBs
NCBI-ProteinID:
SMX56670
UniProt:
A0A1Y6KF44
LinkDB
All DBs
Position
1410027..1412750
Genome browser
AA seq
907 aa
AA seq
DB search
MALKKLSTYRKKRDFEKTAEPSGDAKVAPAARPRFVIHKHDATRLHYDLRLEFGGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWESEDPERGF
KKGDLKFTLEGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEFAREGEANDIIEADKSV
ASGRSMEQIAAGKGKAPKPFMLAKTQRMDADAVWHSNRSEGEAKSKVSTKASSPKAGAAK
GSAAKGSTAKPRATKTAEPKTVASLPDFVPPELCTSVAAPPSGEGWAHEIKFDGYRVQIR
VEDGQATLKTRKGLDWTAKFGAIAQAAAKLPDAIIDGEIVALDKDGNPNFSALQAAISAG
QTDELVFFAFDLMFVEEFDLRRQPLRERKARLAKLLKANIKGKTPRIRYVEHFESDGEAV
LDSARKLNLEGIVSKKLDSAYHSGRTESWTKAKTRPGHEVVIGGWKTTNGKFRSLMVGVN
KDDHLAYVGIVGTGFGQDTVKEIMPALKAAAAEKSPFSGKNAPRGAREVHWLKPELVAEI
EFAGFTGDGNVRQASFKGLRQDKPAREVVAEEPVVEAKVTKPVARAAATVATGGTTVHKT
PSRSKSSAMVMGVAISKPDKALWPDAGDGEPVTKLDLANYLEAVGDWMIDHIKGRPCSIV
RAPDGIGGERFFQRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWN
CAPDAYDVPGRLVFDLDPAPNVAFEEVIAAAKEMRQRLKTLGLESFCKTTGGKGLHVVTP
LLHGARDKVTWPEAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAV
AVLSPRAREGATVSMPITWAQVKNGLDPKRYTVRTVPGLLAKTKAWDGYDDAAGAIKPAI
KKLTDKL
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
gtggcgctcaagaagctttccacctaccgcaagaagcgcgatttcgaaaaaacggcagag
ccgtccggcgatgccaaggtcgcgcccgcagcgcggccgcgcttcgtgatccacaagcac
gatgcgacacgactgcactacgatctcaggctggaattcggcggcgtcttcaagtcgtgg
gcggtaaccaagggtccgtcgctcgatccgcacgacaagcggctcgcggtcgaggtcgag
gaccatccgctggactacggcgatttcgaaggcaccattcccgaaggcgaatatggcggc
ggcacggtgatgctctgggaccgcggctattgggagagcgaagatcccgaacgcggcttc
aagaagggcgacctgaagttcacgctggaaggcgagaagctgcatggcagctgggtgctg
gtgcggatgcgcaacgaccgaaccggcggtaagcgcaccaattggctgctgatcaagcat
cgcgacgagttcgccagggaaggcgaggccaacgacatcatcgaggccgacaagtcggtc
gcgtcgggacgctcgatggagcagatcgcggccggcaagggcaaggccccgaagccgttc
atgctggccaagacgcagcgcatggatgccgacgcggtgtggcactcgaaccgcagcgaa
ggtgaagcgaagtcgaaggtttcgaccaaggcctcatcgccgaaggccggggcggcaaag
gggagcgctgccaaggggagcactgcaaagcctcgcgctacgaagacggccgagccgaag
accgtcgcgtcgctgccggacttcgtgccgcccgagctctgcacctctgtcgcggcgccg
ccgagcggcgaaggctgggcgcacgagatcaagttcgacggctatcgcgtgcagatccga
gtcgaggacggccaggcgaccttgaagacgcgcaagggtctcgactggaccgcaaagttc
ggcgcgatcgcgcaagccgcggccaagctgccggatgcgatcatcgatggcgagatcgtc
gcgctcgacaaggacggcaatccgaacttctccgcgctgcaggccgcgatctcggccggc
cagactgacgagctggtgttctttgccttcgacctgatgttcgtcgaggagttcgacctg
cgtcgtcagccgcttcgtgagcggaaggcacgccttgcgaagctgctgaaggcgaacatc
aagggcaagacacctcgcatccgctatgtcgagcatttcgagagcgatggcgaggcggtg
ctggactcggcgcgcaagctgaacctcgaaggtatcgtctcgaagaagctggattccgcc
tatcattccggacgcaccgagagctggaccaaggccaagacaaggcccggccacgaggtg
gtcattggtggctggaagaccaccaacggcaaattccgctcgctgatggtcggcgtcaac
aaggatgatcacctcgcttatgttggcattgtcggcaccggcttcggccaggacacggtg
aaggagatcatgccggcgctgaaggcggcggcggccgagaagagtccgttcagcggcaag
aacgcgccgcgtggggcgcgcgaggtgcattggctcaagcctgaactggtggccgagatc
gagttcgccggctttaccggagacggcaacgtcaggcaggcgtcgttcaagggactgcgt
caggacaagccggcgcgcgaggtcgtcgctgaggagccggttgtcgaggccaaggtgacg
aagccggtggcgcgcgccgcggccacggtggcgaccggagggacgacggtgcacaagaca
ccgtcgcgatccaagagttcggcgatggtcatgggcgtcgcgatctcgaagcctgacaag
gcgctgtggccggacgccggcgacggtgagcccgtgaccaagctcgacctcgccaactat
ctggaagccgtcggcgactggatgatcgatcatatcaaggggcggccgtgctcgatcgtg
cgtgcgccggacggcatcggcggcgagcggttttttcagcgccacggcatgcagggcatg
tccgatctgctcgaactggtgaaggtgtccggtgatcggaaaccctatctgcagatcgat
cgcgtcgagggactgatcgcagtggcgcaggtcgccgcggtcgagctccatccgtggaat
tgcgcgcccgatgcgtatgatgtgccgggacgcctggtgttcgatctcgatccggcgccg
aacgtcgccttcgaggaggtgatcgctgcggccaaggagatgcggcagcggctgaagacg
cttggcttggagagcttctgcaagaccaccggaggcaagggcctgcacgtcgtgacgccg
ctactgcatggcgcgcgcgacaaggtgacatggccggaagcgaaggcgtttgcgcagggg
gtgtgccaatggatggccaatgacagccccgacgactacctgctcaacatgtcgaagaag
ctgcgcaagggaaagatcttcctcgactatctgcgcaacgaccggatgtcgaccgcggtc
gcggtgctgtcgccgcgggcgcgtgagggcgcgacggtgtcgatgccaatcacctgggcg
caggtgaagaatgggctcgatcccaagcgctacacggttcgcaccgtgccggggctgctc
gcgaaaaccaaggcgtgggacggttacgatgatgcggccggagcgatcaagccggcgatc
aagaagctgacggacaaactgtaa
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