Brooklawnia propionicigenes: brsh051_18270
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Entry
brsh051_18270 CDS
T09125
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
broo
Brooklawnia propionicigenes
Pathway
broo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
broo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
brsh051_18270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
broo03400
]
brsh051_18270
Enzymes [BR:
broo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
brsh051_18270
DNA repair and recombination proteins [BR:
broo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
brsh051_18270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BEH02546
LinkDB
All DBs
Position
complement(2027699..2030395)
Genome browser
AA seq
898 aa
AA seq
DB search
MAAKKTQTIQVGEVTLAVSNLDKVMYPQTGTTKGEVIDYYLKIASVLVPQAAWRPATRKR
WVDGVGTPDKPGQVFFRKDIEDGAPGWVPTGQIVHKERTNVYPLANNAAVLAWFAQLAAL
EIHVPQWRFGDDGAPRNPDRLVIDLDPGPEAGLPQCVEVAQAIREIFQGMKLDAVPVTSG
SKGIHLYAPLDGRTTSEQASAVAKQLALSLEETMPNLVVATQRKTLREGRVLIDWSQNNA
AKTTICPYSLRGRMHPTVAAPRTWDELERPNLAQLDYREVLERVASGIDPIADQGWVFDQ
APGSTDKLTRYREKRDADATPEPVPAEPGEGEGGRADDASGPADQKGGPVDSSSSTDQKS
AAAAASGAPTFVIQEHHAHRLHWDFRLERDGVLVSWAVPKGPPLAPDDHRLAVQTEDHPL
EYGSFEGIIPKGQYGGGSVTIWDAGTIEVEKWRDDEIIVVLHGRKTGGLGGIPRRYVLIR
TQGQGEKSHWLLIFKKDQPGSSPDAGSSPEAGSSPEAGSSPETGTSHQPAPPDQPAPPDQ
PDASPQPHQPDSSNQPSSSHQPDASPQPPPPDRLPAPMLASLGSPSDLHDPQQWALEMKW
DGVRAICAVAGGRVRLVSRNGNDITDLYPELGELADDLGAQAAILDGEIVALDPRGRPDF
SLLQPRMKADPRVAPRLADQAPVTLMLFDILSLTLDGTEHHLMRTPYRARRELLATAISP
TERVRVPPAFDGSLDEAIAHARAERLEGVLAKRLDSIYTPGRRSQQWIKIKPRTDQSVIV
IGWRTGPDGKLRSLLVAVPGADGELHYLGRAGSGIAPGDIDDIARTLAGIERKTPPVARI
PDADRRDARWVTPTLVGEVAYSELTPQGRLRAPSWRGWRPDLSASDVRWEGAGALPTP
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcagccaagaagacccagaccatccaggtcggcgaagtgacgctcgccgtgtccaac
ctcgacaaggtcatgtacccgcagacgggcaccaccaagggcgaggtcatcgactactac
ctcaagatcgcctcggtgctggtaccgcaggcggcctggcggccggccacccgcaagcgg
tgggtggacggggtcggcacccctgacaagcccggacaggtcttcttccgcaaggacatc
gaggacggcgcccccggctgggtgccgaccggccagatcgtccacaaggaacggacgaac
gtctacccgctggccaacaacgccgcggtgctggcctggttcgcgcagctggccgccctg
gagatccatgtgccgcagtggcgcttcggtgacgacggcgcgccgcgcaaccccgaccgc
ctggtcatcgatctggaccccggccccgaggccggtctgccgcagtgcgtcgaggtggcc
caagcgatccgcgagatcttccagggcatgaagctggacgccgtgccggtgacctccggc
tcgaagggcatccatctgtacgcgccgctggatggccggacgaccagcgagcaggcctcg
gcggtggccaagcaacttgccctgtcactcgaagagaccatgccgaacctggtcgtggcg
acccagcggaagaccctgcgcgaggggcgggtgctcatcgactggtcgcagaacaatgcc
gcgaagacgacgatctgcccctactcgctgcgcggtcgcatgcatccgacggtggccgcg
ccccgtacctgggacgaactcgagcggcccaacctggcccagctcgactaccgggaggtg
ctggaacgggtcgcctccggcatcgatccgatcgcagaccagggctgggtgttcgaccag
gctcccggcagcaccgacaagctgacccgctaccgcgagaagcgcgacgccgacgccact
ccggagccggtgcctgccgagcctggtgagggcgagggcgggcgggcggacgatgcgagc
ggcccggcggaccagaagggcggcccggtagacagcagcagctcgacggaccagaagagc
gccgcggcagcggccagcggtgctccgaccttcgtcatccaagagcatcatgcgcaccgt
ctgcactgggatttccggctggaacgcgacggcgtgctggtgtcgtgggcggtgccgaag
gggccgccgctggcccccgacgatcaccggctggccgtgcagaccgaagaccaccccctc
gaatacggcagcttcgaggggatcatcccgaagggccagtacggcggcggttcggtcacc
atctgggacgccggcaccatcgaggtggagaagtggcgcgacgacgagatcatcgtcgtg
ctgcacggacgaaagaccggcggcctgggcgggattccgcgccgctacgtgctgatccgc
acccaggggcagggcgagaagtcccattggctgctgatcttcaagaaggaccagcccggt
tcgtccccggatgctggctcgtccccggaggccggttcatccccagaggccggctcatcc
cccgagaccggtacatcccaccagcccgcaccgcctgaccagcccgcaccgcccgaccaa
cctgacgcgtccccgcagccccaccagcccgactcgtccaaccagcccagctcgtcccac
caacccgacgcgtccccgcagcctccgcctcccgaccggctcccggcccccatgctggcc
agcctcggttcaccgtccgacctgcacgacccgcaacagtgggcgctggagatgaagtgg
gacggggtacgcgcgatctgcgcggtcgccggcggccgcgtccggctggtctcacgcaac
ggcaacgacatcaccgacctctatcccgagctgggcgaactcgccgacgatctcggcgcc
caagccgcgatcctggacggcgagatcgtcgcgctcgaccctcggggacgacccgatttc
tcgctgctgcagccccggatgaaggcagacccgcgggtcgcaccgcggctggccgatcag
gccccggtcaccttgatgctcttcgacatcttgtcgctcaccctggatgggaccgagcac
cacctgatgcgcaccccataccgcgcacgccgcgagctgctcgccaccgccatcagcccg
accgaacgcgtccgggtgccgccggcattcgacggcagcctggacgaggccatcgcgcat
gcccgcgcggagcggctggagggtgtgctggccaaacgcctcgactccatctacaccccc
ggacgccgctcccagcaatggatcaagatcaaaccgcgcaccgatcagtctgtcatcgtg
atcggctggcggaccggccccgacggcaagctgcgttccctgctggtggcggtgcccggc
gccgacggcgagctgcactatctggggcgcgcgggctcgggaatcgcccccggcgacatc
gacgacatcgcgcggacgcttgccgggatcgaacgcaagaccccaccggtggcgaggatc
ccggacgcggaccggcgggacgcacgctgggtcaccccgactctggtcggcgaggtggcc
tactccgagctgaccccgcaggggcggctgcgcgcgcccagttggcggggttggcgtcca
gatctgtcggcctcggatgttcgctgggaaggtgccggtgcactgcccacgccatga
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