Brooklawnia propionicigenes: brsh051_19380
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Entry
brsh051_19380 CDS
T09125
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
broo
Brooklawnia propionicigenes
Pathway
broo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
broo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
brsh051_19380 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
broo03400
]
brsh051_19380 (mfd)
Enzymes [BR:
broo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
brsh051_19380 (mfd)
DNA repair and recombination proteins [BR:
broo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
brsh051_19380 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
BEH02657
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All DBs
Position
2141491..2145021
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AA seq
1176 aa
AA seq
DB search
MSFRGLFQSLAADRSVAEAISDAKAAVSAVELDSPAAGRPALIATLAETTGRPLLVVTST
FREAEQLTAVLQSLLGETAAVYYPAWETLPHERLSPRSDTVGRRLAVLRAITGKDDQPKP
KVVIAPVRSMLQPQVAGLADLRPVRLTTGDDYEMGDLAADLVAAAYQRVDLVERRGEFAM
RGGIVDIFPPTEEHPVRIDFFGDQIDSITYFHVADQRSTDESVGGIIAAPCRELLITEKV
QQRAADLIGSHPELAEMLEKIAEGQATEGMEALIPALVDRLELLIDVLPSSTLILVNDPE
LVRTRAEDLVRTSQEFLHAGWAAAASGGRAPIDLGASAYQQLADVRAHALERGQGWWSLS
PFVPDPDAETGEHLNLVDIPSWHGDVQAFTAQIKQDVADGWRVLLSVEGPGQASRMAEVL
RDNDIASGIVEDLDEVPEQSPVVHIFRSGMRKGWRAPRIGLVVHAAGDITGAITTAERAA
RKMPAKRRNQIVPLELKPGDPLVHQQHGVGRYVEMVTRTVAGATREYLVVEYAPSKRGQP
GDRLYVPMDQLDEISRYVGGETPQLDKMGGADWKHRKSRARRAVHEIASGLIKLYAARQA
TKGHAFGPDTPWQRELEDSFSFTETPDQLSCINDVKHDMEQIIPMDRLVCGDVGYGKTEI
AVRAAFKAVQDGKQVAILVPTTLLVQQHAQTFADRYAGFPITVASLSRFQSASETRKTIE
GLASGRVDVVIGTHRLISDSVKFKDLGLVIIDEEQRFGVEHKEALKQMRVNVDVLSMSAT
PIPRTLEMAVTGIREMSTIATPPEERHPVLTFAGPYDQGQVAAAIRRELAREGQVFYVHN
RVQDIDKVAAELRQAVPEATIVTAHGKMGERALEKVMVDFWERRIDVLVCTTIVEAGIDV
STANTLIIDRADRMGLSQLHQLRGRVGRSRERGYAYFLYPPDKPLTETAHDRLSALAANA
DLGAGMAIAMKDLEIRGAGNLLGDEQSGHIADVGFDLYIRMVGEAIAEYRGEQTGDEEAE
MRIELPVDAHLPTDYVESERLRLEMYRRLAEVRSEDDIAQVRAELLDRYGPLPEPTEALL
DVARFRLACREAGLTEVMTQGNYIRFAPVADLPESRQLRLQRVHPGTLIKAQTNVALVPR
PRTRGVPSVAVEGAELLKWAAGVVSIFGASKAVVGQ
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
gtgagtttccgggggcttttccaatcactggccgctgatcgcagcgtcgccgaggcgatc
agcgacgccaaggcggcggtgtcggcggtcgaactggacagcccggcggctgggcgtccg
gcactgatcgcgacgctggccgaaaccaccggacgtccgctgctggtggtgacctccacc
ttccgggaagcagaacagctcaccgcggtgctgcagtcgctgctcggcgagacggcggca
gtctattaccccgcctgggagaccctgccgcacgaacgcctcagcccccgctccgatacg
gtcggacgccgcctggcggtgttgcgagcgatcaccggcaaagatgatcaaccgaaaccg
aaggtcgtcatcgcaccggtccggtcgatgctgcagccccaggttgcgggcctggccgac
ctgcgtccggtcaggctcaccaccggcgacgactacgagatgggcgatctggccgccgac
ctggtagccgccgcctaccagcgcgtcgacctggtcgagcggcgcggcgagttcgcgatg
cgcggcggcatcgtcgacatcttcccgcccaccgaagagcatccggtgcgcatcgacttc
ttcggtgaccagatcgattccatcacctacttccacgtcgctgatcagcgttccaccgac
gaatcggtcggcggcatcatcgccgccccctgtcgcgaactactgatcaccgagaaggtc
cagcagcgtgccgccgacctgatcggctcgcaccccgagcttgccgagatgctggagaag
atcgccgagggccaggccaccgagggcatggaggcgctgatcccggcgctggtcgacaga
ctcgagctgctcatcgacgtgctaccaagtagcaccttgattctggtcaatgatcccgaa
ctggtccgcacccgcgccgaagacctggtgcgcaccagccaggagttcctgcatgcaggt
tgggcagccgcggcatcgggtggacgcgcgcccatcgacctgggggccagcgcctaccag
caactcgccgacgtccgcgcgcacgccctggaacgcgggcagggctggtggtcgctgtca
ccgttcgtccccgacccggacgccgagaccggcgagcatctcaacctggtcgacattccc
agctggcatggcgacgtccaagccttcaccgctcagatcaaacaggacgtggccgacggc
tggcgggtgctgctcagcgtcgaaggccccggccaggccagccggatggccgaggtgctg
cgcgacaacgacatcgcctcgggcatcgtcgaagacctggacgaggttcccgagcagtcc
ccggtggtgcatatcttccgtagcgggatgcgcaagggctggcgggcaccgcgcatcggg
ctggtcgtccacgcggccggcgacatcaccggtgcgatcaccaccgccgaacgcgccgcc
cgcaagatgccggccaaacggcgcaaccagatcgtcccgctggaactcaaacccggcgat
ccgctggtgcatcagcagcacggcgtcggacgctacgtcgagatggtcacccggacggtg
gccggtgccacccgcgaatacctggtcgtcgaatacgcgccgtccaaacgcggccagccc
ggcgaccggctgtacgtgccgatggaccagctcgacgagatctcccgctacgtcggcggg
gagaccccgcaactcgacaagatgggcggagccgactggaagcatcgcaaatcccgggct
cgccgggccgtccacgagatcgcatccggcctgatcaagctctacgcagcgcgtcaggcg
accaagggccacgcgttcgggcccgacaccccctggcagcgcgaacttgaggactccttc
agtttcaccgagactcccgaccagttgtcgtgcatcaacgacgtgaaacacgacatggaa
cagatcatcccgatggaccggctggtctgtggcgacgtcggctacggcaagaccgagatc
gcggtgcgggccgccttcaaggcggttcaggacggcaaacaggtcgccatcctggtgccc
accacgctgctcgtccaacagcacgcccagaccttcgccgaccgctacgcgggctttccg
atcaccgtggcgtcgctgagccgcttccagtcggcttccgagactcgcaagaccatcgaa
ggattggcgtcgggccgtgtcgacgtggtgatcggcactcaccgcctgatcagcgattcg
gtgaagttcaaggacctgggcctggtgatcatcgacgaggagcagcgtttcggtgtcgag
cacaaggaggctctcaaacagatgcgggtcaacgtcgatgtgctgtcgatgagcgccacc
ccgatccccagaacgctggagatggcggtcaccggtattcgcgagatgtcgaccatcgcg
accccgcccgaagaacgccatccggtgctgaccttcgccgggccctacgatcagggccag
gtggccgccgcaatccggcgcgaactggctcgtgaggggcaggtcttctacgttcacaac
cgggtgcaggacatcgacaaggtggccgccgaactgcggcaggcggtgccggaggcgacc
atcgtcaccgcgcacggcaagatgggggagcgcgcgctcgagaaggtgatggtcgatttc
tgggagcggcgcatcgacgtgctggtctgcacgaccatcgtcgaggcaggtatcgatgtg
tcgaccgcgaacaccttgatcatcgaccgggccgaccggatgggcttgtcgcagctgcat
cagctgcgcggccgggtcggacgaagccgcgagcgcggctacgcctacttcctgtacccg
cccgacaagccgctcaccgagaccgcccacgaccggctgtcggcgctcgccgccaacgcc
gatctcggggcgggcatggcgatcgcgatgaaagacctggagatccgcggcgcgggcaat
ctgctgggcgatgaacagtccggccacatcgccgacgtcggcttcgacctgtacatccgg
atggtcggtgaggcgatcgccgaataccgcggcgagcagaccggcgacgaggaagccgaa
atgcgcatcgaactcccggtggacgcccacctgcccaccgactacgtcgaatcggagcgg
ctgcggctggagatgtaccgcagactcgccgaagtgcgtagtgaggacgatatcgcccag
gtgcgcgccgaactgctcgaccgctacggtccgctgcccgaacccaccgaggcgctgctc
gacgtggcccggttccggttggcctgccgggaggccgggctcaccgaggtgatgacgcag
ggcaactacatccgcttcgccccggtcgccgatcttcccgaatcgcgtcagctgcggctg
cagcgggtgcatccgggcacgctcatcaaggcgcagaccaatgtggcgttggtgcctcgt
ccgcgtacccgcggggtacccagcgtcgcggtggagggcgcggaactgctgaaatgggcg
gcaggggtcgtgtcgatcttcggtgcgagcaaagccgtcgtaggtcagtag
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