Brassica rapa (field mustard): 103838616
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Entry
103838616 CDS
T03449
Name
(RefSeq) endo-1,4-beta-xylanase 1 isoform X1
Organism
brp
Brassica rapa (field mustard)
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Gene cluster
GFIT
Motif
Pfam:
CBM_4_9
Glyco_hydro_10
Motif
Other DBs
NCBI-GeneID:
103838616
NCBI-ProteinID:
XP_009113315
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Position
A09:complement(11270881..11274970)
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AA seq
949 aa
AA seq
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MKRFTVCCFSNPIHKNKNHNPDKKLRNSMEISRNDNGEHAKQNNNNNVTPVIGSDRTNVI
VNHDFSLGTHSWHPNCCEASIVTADSGIPHGVLDPSKYGSYVVVNNRKETWQGLEQDITS
RVKPCSLYKVTATVAVSGPVQGLEEVMATLKLENQQSPTNYQFIAKTCVFKEKWVRLEGM
FSLPSLPERVVFYLEGPSPGIDLLIQSVTIHLESDPELERREAVTVEDENLVVNPNFEDG
LNNWSGRSCKIVCHDSMADGKIVPQSGKAFAAATERTQSWNGIQQEITGKVERKRVYEAT
AVVRIYGNNVTSATVQATLWVQNPNQRDQYIGIANVQATDKEWIQCKGKFLLNGSASRVV
IYIEGPPPGTDILLNSLTVKHAEKIPPSPRPAIENPAFGVNILTNSQLTDGTTNGWFPLG
NCTLSVAEGSPRILPPMARDSLGPHEPLSGRYMLVTNRTQTWMGPAQMITDKLKLFLTYQ
ISVWVKLGSGINSPQNVNVALGIDSQWVNGGQVEINDDKWHEIGGSFRVEKQPSKTLVYI
QGPSSGVDLMVAGLQIFPVDRLARIKHLRRQSDKIRRSDVILKFSGADASKLSGATVKVR
QTRNSFPVGTCISRSSIDNEDFVEFFLKNFNWAVFGNELKWYWTEPEQGKLNYQDADDML
NLCSSNNIETRGHCIFWEVQATVQQWIQNMNQNDLNTAVQNRLTGLLNRYKGKFKHYDVN
NEMLHGSFYQDKLGKDIRVNMFKTAHQLDPSARLFVNDYHIEDGCDPKSCPEKYIEHILD
LQEKGAPVGGIGIQGHIDSPVGPIVCSALDRLGILGLPIWFTELDVSSINEHIRGDDLEV
MMWEAFGHPAVEGIMLWGFWELFMSRDNSHLVNAEGDVNEAGKRLLAVKKDWLSHANGHI
DQNGAFAFRGYHGNYAVEVITSSSQKVLKTFVVEKGDSAQVITVDLQGL
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgaagagattcacggtctgctgcttctcaaatccaattcacaagaacaaaaatcacaat
ccagacaagaaactaagaaacagcatggagatttcaagaaacgacaatggagagcatgca
aaacagaacaacaacaacaatgtgacaccagtcatcggttctgatcgtaccaatgttatt
gtgaaccatgacttctctttggggacgcattcatggcatccaaattgctgcgaggcatct
attgtcaccgcagattctggtatccctcacggtgtattagacccgtcaaagtatggcagc
tatgtagttgtcaacaacaggaaagaaacttggcaaggcttagagcaagacataacaagc
agagtgaaaccttgttctctctataaagttactgcaactgttgccgtctctggtcctgtt
caaggattggaagaggtcatggccactctgaagctcgaaaaccaacaatcaccaacaaac
tatcagttcatcgcaaaaacttgtgtattcaaggagaagtgggtgagactagaaggaatg
ttctcgttaccaagcttaccggagagagttgttttctatttggaaggtccttcaccaggg
attgatctcttaatacagtctgttaccattcaccttgaaagcgatcctgagctggaacga
cgagaggctgttacagtggaagatgagaatcttgtagtgaatccaaactttgaagatgga
ctaaataactggtctgggagaagctgcaagattgtgtgtcatgactccatggctgatgga
aagatagttccacaatctggaaaagctttcgctgcagcgacagaacgcacacagagctgg
aacggtattcaacaagagattactggaaaagttgagaggaaacgtgtatatgaagcaacc
gccgttgttcgtatatatggaaacaatgtgacaagtgctactgtgcaagctactctatgg
gtccagaatccaaatcaacgtgaccaatacattggcattgccaatgtgcaagcaacagac
aaggagtggatacaatgtaaagggaagttcctcctcaatggttctgcatcacgggtagta
atttacatcgaaggtccgcctccaggaaccgatattctcctgaacagcttaaccgtaaag
cacgctgagaaaattcctccttcaccgcgcccagccattgagaatcctgcatttggggtg
aacatactcaccaacagccagttaactgatggtacaaccaacggctggttcccattgggg
aactgcacgctaagcgtagcagaaggctcccctcgcattcttcctccaatggcaagggac
tcgcttggaccacacgagcctctaagtggtcgctacatgctagtgactaaccgaacacag
acatggatgggtccagctcaaatgatcactgacaaacttaaactgttcttgacataccaa
atatcagtttgggttaaactcggttccggcattaatagtccgcagaatgttaacgtcgca
cttggtattgatagccaatgggtaaacggtggacaagtcgagatcaacgacgataaatgg
catgagattggtggttctttccgagttgagaagcaaccatcaaagactttggtttatatt
caaggcccttcttctggcgttgatctcatggtcgctggcttgcagattttccctgttgac
cggctcgcgagaatcaaacacttgagaagacaaagtgacaagatccgtagaagcgacgtt
atcctcaaattctccggtgctgatgctagcaaactgtctggagctacggttaaagttaga
cagacaaggaacagcttccctgtgggaacttgcatcagcagatcaagcatagataacgaa
gatttcgtcgagtttttcttgaaaaactttaactgggcggtcttcggtaacgagctgaaa
tggtactggacggagccagaacaagggaagcttaattatcaagacgcggacgatatgctc
aacttgtgcagtagcaacaacatagaaacaagaggacattgtatcttttgggaggtccaa
gcaactgttcagcagtggatacaaaacatgaaccaaaacgacttaaacaccgcagtccaa
aaccgcttaaccggtcttttaaaccggtacaagggaaaattcaaacattatgatgtgaac
aacgagatgttacatggatcattctaccaagacaagcttggcaaagacataagagtcaac
atgttcaagaccgcacaccagctagacccgtcagcaagattgtttgtgaatgattaccac
atagaagacgggtgtgatccaaaatcatgccccgagaagtacattgagcatattcttgac
ctgcaagaaaagggtgcgcctgtaggaggaattgggattcaaggccatatcgatagtcca
gtgggtccaattgtttgttcagctctagacagactaggaatccttggtttaccgatatgg
ttcacggagttagatgtctcctccattaatgagcacatcaggggagatgatttggaggta
atgatgtgggaagcttttggacatcctgcggttgaaggcatcatgttatggggattttgg
gagctgttcatgagtagagacaactctcatttggttaatgcagaaggtgatgttaatgaa
gctggtaaaaggcttttggctgtgaagaaagattggctctctcatgctaatggacatatt
gatcaaaacggtgcgtttgcgtttagagggtaccatggaaattatgctgttgaagtgatt
actagttcatctcaaaaggttcttaaaacgtttgttgttgaaaaaggagattcggctcag
gttattactgtggatcttcaaggtttgtga
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