Brassica rapa (field mustard): 103839806
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Entry
103839806 CDS
T03449
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103839806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brp03021
]
103839806
03019 Messenger RNA biogenesis [BR:
brp03019
]
103839806
Transcription machinery [BR:
brp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103839806
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103839806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Motif
Other DBs
NCBI-GeneID:
103839806
NCBI-ProteinID:
XP_009114538
UniProt:
A0A3P5Y0B9
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Position
A09:complement(17147450..17151300)
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AA seq
773 aa
AA seq
DB search
MQSEKILNPSLLLSTTTGRKSMSVVKPPPPPSILDRFKALLNQREDEFGGEDPSSEEVVQ
LYEVVLGELTFNSKPIITDLTIIADEQREHGEGIANAICTRILEAPVEQKLPSLYLLDSI
VKNIGRDYARYFSSRLPEVFCLAYRQAHPSLHPSMRHLFGTWSGVFPSPVLRKIEMQLKL
TSATNSQSSLGASEPAQPTRGIHVNPKYLRRLEPSAAESNLRGISSSAKVYSQNSVGGYD
DFEDQLDSPSSLAGPRSSTAGTLTLASSAIGADGFPRRFSDGVNSSNQAYNYGMGRATGR
DDEHMDWRRKDNFGQGNDHERPRALIDAYGVDTSKHTSISRPIRNVNGIHSKMVTPWQNT
EEEEFDWEDMSPTLERSRAGEFLRSSVPALGSVRPRPRLGNIHDFQLDSDIKNGMNSRFG
RGPAMISRVGPSGADVLPDGTWPHLGVRGSNSLPVPSAQHHLANPGNAMLNHLNGKPLYR
PENQVSHMTQQNQVLGNYLPSSSAMAPRAMQSLLPHGHGYPPLGSTIRPSLSVHGGEAMH
PHSSGVSISQNPSLGASNQPPGGAFSGLIGSLMAQGLISLNNQPTGQGASVMEFDADMLK
IRNESAITALYGDLPRQCTTCGLRFKCQEEHSKHMDWHVTKNRMSKNHKQKPSRKWFVSG
SMWLSGAEALGAEAVPGFLPVEPTTEKKDDEEMAVPADEDQTSCALCGEPFEDFYSDETE
EWMYKGAVYMNAPDGSTTDVDKSLLGPIVHAKCRPETNGGDMEEGSQRKRMRS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggagaaaatcctcaacccaagccttcttctcagcaccaccaccggccgcaaa
tcgatgtccgtcgttaaaccgccgccgccgccgtcgatactcgaccggttcaaggctctg
ctcaatcagcgcgaggacgagttcggcggcgaggatccgagttcggaagaggttgttcag
ctctacgaggttgttctgggcgagctcactttcaattccaagcctatcatcactgatctc
actatcatcgccgatgagcagcgcgagcacggcgaagggatcgctaatgctatctgcact
cgaatcctcgaggcaccggttgagcaaaagctgccgtctttgtatcttttagacagtatt
gtcaagaacattgggagggactatgctcgttacttctcgtctcgtttaccagaggtcttt
tgtctagcgtacaggcaagcgcacccgagtttacatccttcaatgcgccacctgtttggg
acttggtctggtgttttcccatcacctgtattacgcaagattgagatgcagttgaagctt
acttccgcaacgaacagccaatcttccttaggggcttctgagccggctcaaccaacaagg
ggcatacatgttaatccgaaatatcttcgtaggctggagccctctgccgctgagagtaac
ttgagaggaataagttccagtgcaaaagtgtatagtcaaaactcagtcggcgggtatgat
gattttgaagatcagttagatagcccatcttctctggccggaccaaggtctagtacagct
ggaactttgaccctcgcatcttctgcaattggagcagatgggtttcctaggaggtttagt
gatggagttaattcttctaatcaagcctataactatggaatgggtcgggctactggcaga
gatgatgaacacatggactggcgaagaaaggacaacttcggccaaggaaatgaccatgaa
agacccagagctttgatagatgcatatggagttgacaccagcaaacacacatccatcagt
agaccaatccgcaacgtgaatggtatccacagtaagatggttacaccatggcagaacacc
gaggaagaagagtttgattgggaagatatgagccctacactagagcgtagtagggctggt
gaatttttgcgatcatctgttccagcattaggaagtgtaaggccaagacctagactagga
aacatacatgattttcagttagattctgacattaagaacggtatgaactctcgttttggt
cgaggacctgcgatgatatcaagagttgggccttctggtgctgatgttcttcctgatggg
acatggccccatttgggtgttagaggatccaactctctccctgtaccttctgctcagcat
catttggcaaatcctggtaatgcgatgttaaatcacttgaatggtaagcctttatatagg
ccagaaaaccaggtctcccacatgacccaacagaatcaagtgctaggaaattacttaccg
tcttcatctgcaatggcaccaagggcaatgcaatcgctgttaccccacggtcatggttac
cctccactagggtcaaccattagaccatcgttatcagtccatggtggggaagccatgcat
cctcattcttcaggggtttccatctctcagaatccttcgttgggagcctctaaccaacca
ccgggcggtgcattctctggtctgattggctctctcatggctcaaggtttgatctcgttg
aacaatcagcctactggccagggggcttcggtgatggagtttgatgcggacatgctcaag
atacgtaacgagtctgcaataactgctctatatggggatcttcccaggcaatgcacaaca
tgtggtctacgctttaagtgccaagaagagcacagtaagcacatggattggcatgtaacc
aagaacaggatgtccaagaaccataagcagaagccttctcggaaatggtttgtaagtggt
agcatgtggcttagtggcgcagaggcacttggagctgaagcagtgccggggttcttacct
gtcgagccaacaacagaaaagaaggatgacgaagagatggcagttcctgcagatgaagac
caaacttcatgcgcattatgtggtgagccgtttgaagacttctatagtgatgagacggag
gaatggatgtacaaaggtgctgtatacatgaatgctcctgacggatcaacaacagatgtg
gacaagtctttgttaggtcctattgtacatgctaagtgtaggccagagactaatgggggt
gatatggaagagggtagtcaaagaaaaaggatgcggagttag
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