Brassica rapa (field mustard): 103850626
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Entry
103850626 CDS
T03449
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 12 isoform X1
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103850626
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
brp01002
]
103850626
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103850626
Enzymes [BR:
brp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
103850626
Peptidases and inhibitors [BR:
brp01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
103850626
Ubiquitin system [BR:
brp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
103850626
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
UCH
USP7_C2
MATH
UCH_1
RA
ubiquitin
SASP
Malt_amylase_C
Motif
Other DBs
NCBI-GeneID:
103850626
NCBI-ProteinID:
XP_009125652
LinkDB
All DBs
Position
A02:complement(1032243..1041092)
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AA seq
1116 aa
AA seq
DB search
MTMVTPPPVDQQEDEEMLVPHSDLVEDPAQPMEVSETETAVSTVENQPAAEEPPTLKFTW
TIPHFSRINTRKQYSDVFVVGGYKWRILIFPKGNNVDHLSMYLDVADAASLPYGWSRYAQ
FSLAVVNQVHTRYTIRKETQHQFNARESDWGFTSFMPLSELYDPSRGYLANDTVYIEAEV
VVRKVLDYWSYDSKKETGFVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDAPT
ASIPLALQSLFYKLQYNDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKG
TVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCKDVYASFDKYVEVERL
EGDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDSMVKINDRYEFPLELDL
DREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKE
DLKRALEEQYGGEEELPQTNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIA
EHLRVRLKKEQEEKEDKRKYKAQAHLFTIIKVARDQDLKEQIGKDIYFDLVDHDKVRSFR
IQKQTPFQQFKEEVAKEFGIPVQCQRFWIWAKRQNHTYRPNRPLTPQEELQPVGQIREAS
NKANTAELKLFLEVELLDERPIPPPEKSKEDILLFFKLYDPEKPELRYVGRLMVKSSSKP
MDITGKLNEMAGFAPDEEIELFEEIKFEPGVMCEHLDKKNSFRLCQIEDGDIICFQKPVV
NKETECRYPAVPLFLEYVQNRQLVRFRALEKPKEDEFVLELSKLHTYDDVVERVAEKLGL
DDPSKLRLTSHNCYSQQPKPQPIKYRGVDRLSDMLVHYNQTSDILYYEVLDIPLPELQGL
KTLKVAFHHSTKEEVVIHNIRLPKQSTVGDVINELKTKVELSHPDAELRILEVFYHKIYK
IFPLTERIENINDQYWTLRAEEIPEEEKNIGPNDRLILVYHFAKETGQNQQVQNFGEPFF
LVIHEGETLEEIKNRIQKKLHVSDEDFAKWKFAFMSMGRPEYLQDSDVVYNRFQRRDVYG
AFEQYLGLEHTDTTPKRAYSANQNRHAYEKPVKIYN
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgactatggtgactccgcctcccgtcgatcagcaagaggatgaggagatgcttgttccg
cattcagatttggttgaggatcctgctcagcccatggaagtttccgaaactgagactgct
gtgagtactgtggagaatcagccagcagctgaggagcctcccactctgaaattcacgtgg
actatcccacacttctcgaggattaacaccaggaagcagtactccgatgtgtttgttgtt
ggaggttacaaatggcgcatattgattttcccgaaagggaacaatgttgaccatttgtcc
atgtacttggatgttgctgatgctgcgagtttgccttacggctggagcaggtatgctcag
ttcagcctggctgttgtcaatcaagtccacaccagatacaccattagaaaagaaacgcaa
catcaattcaatgcgagagaaagcgattggggatttacgtcattcatgcctcttagcgaa
ctttatgatcctagtagaggatatttggcgaatgatactgtttacattgaagctgaagtt
gttgtgcgtaaggttcttgattattggtcttacgattccaaaaaagagaccgggtttgtt
ggtctcaagaaccaaggtgcaacttgttacatgaattcgcttctacagacactataccac
attccttacttcagaaaggctgtataccacatgccaaccactgagaacgatgcgcccaca
gcaagtatacctttggctctccaaagtttgttttacaagctccaatataacgacaccagt
gttgcgacaaaggagctgacgaagtcgtttggctgggacacatatgattctttcatgcaa
catgatgtccaagaactaaatcgagttctctgcgagaaacttgaggataaaatgaaggga
actgttgtggagggaactatacaacagctatttgagggtcaccatatgaattatatcgag
tgcataaatgtagattacaaatctacacgaaaagaatcattttatgaccttcagctggat
gttaaaggctgcaaggatgtttatgcttcttttgacaaatatgttgaagttgaacgcctt
gaaggagacaacaaatatcatgcagaaggacacggattacaggatgcaaaaaaaggtgtt
cttttcatagactttccaccggttcttcagctccagctcaaaaggtttgaatatgacttc
atgagggattccatggtgaagataaatgatcggtatgaatttccgctggaactggacctt
gatagagaggatgggaagtatttatcccctgatgctgacaggagtgtccgcaacctttat
actcttcacagtgtcttagttcatagtggaggagtacatggtgggcattattacgcattt
ataaggcccacgctctcagatcaatggtataaatttgatgatgaacgagtaaccaaagaa
gatttgaaaagggcactggaggagcaatatggtggtgaagaggagctaccacagactaat
cctggtttcaataaccctcctttcaaattcacaaagtactcgaatgcatatatgcttgta
tatatccgggaaagtgacaaagataaaataatctgcaacgttgatgagaaagacattgct
gagcacttaagggtgaggctgaagaaggaacaagaagaaaaggaagacaaaagaaaatac
aaggcacaagctcacctttttacgataattaaggttgcaagagatcaagaccttaaggaa
caaattgggaaggatatatattttgatcttgttgaccatgacaaagttcgtagtttccga
atccagaaacaaacaccatttcaacagtttaaggaggaggtggccaaagaatttggtata
cctgttcagtgtcagaggttctggatttgggcaaagcgacaaaaccatacttatcgtccc
aatcgcccccttacacctcaggaggaattacaaccggttggacaaattagagaagcatct
aacaaagcaaacactgcagaacttaagctgtttttggaagtagagctgctggatgaacgt
cctattcctcctcctgaaaagtcaaaagaagatattcttcttttctttaagctttatgac
cccgagaagccagagttaaggtatgttggcagactgatggtgaaaagttccagtaagcct
atggatataactggaaaactgaatgaaatggctggctttgctcctgatgaagaaatagaa
ctttttgaggaaatcaagtttgagcctggtgttatgtgcgaacacctggataagaaaaat
tcattcagattgtgtcaaatcgaagatggagatatcatttgctttcagaaacctgttgtt
aacaaggagactgaatgccgctacccagctgtgcctttgtttcttgaatatgtccagaat
cgacagctggtccgatttcgtgctctggaaaaacctaaagaagatgaattcgttctggag
ttgtcaaagttgcacacttatgacgatgtcgtggaaagagtggcggagaagcttggtctt
gacgatccatccaagcttaggcttacatctcacaattgctattcccagcaacccaagcct
cagcctatcaaataccgtggagtagaccgtttgtcagacatgttagttcactacaatcag
acgtctgatattctgtattatgaagttcttgacattcctcttccagaattgcaaggtctt
aaaaccttaaaagttgcttttcatcattccacgaaggaagaagtggtaatccacaatatc
agactacctaaacaaagcacggtcggagatgttattaatgaactaaaaacaaaggtggag
ctctcgcatccagatgcagaactgagaatacttgaggtgttttaccacaagatctacaag
atttttccattaactgaaagaattgagaatataaacgaccagtactggactttgcgagct
gaggagatcccggaagaagagaaaaacattggtccaaatgatcgcttaattcttgtgtac
cactttgctaaggagactggacagaatcagcaagtgcaaaactttggggagcccttcttc
ttggtaatccatgaaggtgaaactcttgaagaaatcaagaaccgtatccaaaagaagctt
catgtctcagatgaggactttgccaagtggaagtttgcgtttatgtcaatggggcgtccg
gagtacttgcaggactcagatgttgtttacaatcgctttcagaggagagatgtctatggt
gcttttgagcagtacctggggttggagcacactgataccactcctaagagggcttattct
gcaaaccagaaccgacacgcgtatgagaagccggtgaagatatacaattag
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