Brassica rapa (field mustard): 103870532
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Entry
103870532 CDS
T03449
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103870532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
brp03041
]
103870532
Enzymes [BR:
brp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103870532
Spliceosome [BR:
brp03041
]
Complex A
U2 snRNP components
U2 related factors
103870532
Complex B
103870532
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103870532
NCBI-ProteinID:
XP_009146915
UniProt:
M4ELV9
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All DBs
Position
A05:25602985..25606579
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AA seq
887 aa
AA seq
DB search
MEAKNRRDRGRDRSEERRKGKRLENNMRKRRCESVRSIDSEDERDRYVGGGQREKRKEKD
KDRRRRAMEKGGKNREHERDRGQDRKRGREGSEESGDDVKRRRQEDNGEKKEAREEEVED
GVKQLDEEAEKRRRRLHEWQEMKKKKEETKSENKSWNLEGESDDEQVPPQTETDDAMMVD
LDEEVIDPLDAFMNTMVLPEVEKLSNAASPLGTVLDSNKDINKAALGWIIQGEDSDSDYS
ATKYDDDQPSMDKENVELMKKTKGDKLTLVDHSNIEYQPFRKNFYIQVKDISNLTEQEVN
THRKELEIKVHGKDVPRPIKSWHQTGLTTRILNTIKKLNFQKPTPVQAQALPLIMSGRDC
IGVAPTGSGKTLSFVLPMLRHINSQPPVEPGDGPIGLVMAPTRELVQQIHTDIKKFAKSL
SIRCVAVYGGSGVAQQISELKRGTEIIVCTPERMIDILSTNSGKVTNLQRVTFLVMDEAD
RMFDMGFEPQITRIIQNIRPDRQTVLFSATFPRQVEALARKVLNKPVEIQAGGRSVVNKD
ITQFVEIKLESEKRPRLVELIEEWYDKGKVLVFVGSQEKCDGLYNDLKNKCGYRCQSLHG
GKDQIHREVAVSEFKSSVCNLLVATSVAARGLDVKEVELVVNFDAPNHYEEYVHRVGRTG
RAGRKGCAVTFVSEDDARYAPDLVKALERSEQVVPDGLRAMADGFMEKVREGVEKGRGSG
FGGSGFKFNEEEDVRRAAKEAQKKEDGVEEEDKSELEDEGEISQQKQKATMVVAAMLRGC
ARTQQHYEGELEINDFPQNARWRVTRRETLGSISDWSGAAITTRGQFFTPGRVPGHGERK
LYLFIERTSEESVKAAKGELMRVVNDITSQALSLPGRSSQHGRYSVL
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atggaggctaagaatcgccgagatcgtggccgtgatcgcagtgaggagcggaggaagggg
aaacgtttggagaataacatgcgtaagagacggtgcgagagcgttaggagtattgattct
gaagatgagcgtgatcgctacgttggtggaggacagagagagaagcgaaaagaaaaggac
aaggatcggagacggagggctatggagaagggaggaaaaaatcgagaacatgagagagat
agagggcaagatcggaagaggggtagagaaggcagtgaagagagcggtgatgatgtcaag
cgtagaagacaagaggataatggtgagaagaaagaagccagggaagaagaagtagaggat
ggggttaagcagttggatgaggaggcggagaaacgtaggagaagattgcatgagtggcaa
gagatgaagaagaaaaaggaggaaactaaaagtgagaataagtcttggaatcttgaagga
gaatctgatgatgaacaagtccctccccaaacagaaacggatgatgctatgatggtagac
ttggatgaagaggtaatcgatcctttagatgcttttatgaatactatggttttacctgag
gttgagaagcttagcaacgctgcttctcctctaggtactgttttggactctaacaaggac
atcaataaagcagcccttggttggatcattcaaggtgaagattctgattctgactattca
gcgacaaaatatgatgatgatcaacctagtatggacaaagaaaacgtggagctcatgaag
aagacaaaaggagataaactgactcttgtcgaccattcaaacatagaataccaacctttc
cgtaagaacttctacatccaagtgaaagacatctcaaacctaacagaacaagaagtcaac
actcacagaaaagagctggagataaaagtccatggaaaagatgtgccaagacccatcaaa
tcatggcaccaaaccggcctaaccaccagaatcttgaacacaatcaagaaactcaacttc
caaaaaccaactcctgtccaagcacaagccctcccactcataatgtccggtcgagactgc
atcggagtcgcaccaaccgggtcaggcaaaaccctcagcttcgttctaccaatgctaaga
cacatcaactcccagcctcccgtcgaacccggcgacgggcccattgggcttgtgatggca
ccaactagagagctagtccagcagattcacaccgatatcaagaagtttgcaaagtcactg
agtatcagatgcgtggctgtatacggaggttcaggagttgctcagcagatcagtgagctt
aagcgtgggactgagataatagtctgcactcctgaaagaatgattgacattctctccaca
aacagtggcaaagtaaccaatctccaaagagtcacgtttcttgtaatggatgaagctgac
cgtatgttcgacatgggcttcgagcctcagatcactcgtatcatccaaaacatacgacca
gaccgtcaaactgtcctcttctcagccaccttcccacgtcaagtcgaggctttagcgcgt
aaagtcttgaacaagcctgtagagatacaggccggtgggaggagcgtcgtgaataaagat
ataactcagtttgttgagatcaagttagagagcgagaagaggcctaggctcgtggagctt
atagaggaatggtatgataaagggaaggtcttagtctttgttggttcacaggagaaatgc
gacggtttgtataacgacttgaagaataaatgtggttaccgttgtcaatctctccacgga
gggaaagatcagattcaccgtgaggtggctgtgtctgagtttaaaagcagtgtttgtaac
ttgttggttgctactagcgttgcggctagaggtttggacgtgaaggaggttgagttggtt
gtgaactttgacgctccgaatcattatgaggagtatgtgcatcgtgttggtaggacgggg
agggcggggaggaaggggtgcgccgtgacgtttgtgtccgaggatgatgcgaggtacgcg
ccggatttagtcaaggctttggaacggtctgagcaggtcgttcctgatggtttgagagcg
atggctgatggttttatggagaaggtgagggaaggtgttgagaagggtcgtgggagtggt
tttggcgggagtgggtttaagtttaacgaggaggaggatgttaggagagcagcgaaggag
gcgcaaaagaaggaggatggtgttgaggaagaagacaagtctgagttggaagatgagggt
gagatctcacagcagaagcagaaggctactatggttgttgctgctatgctgcgaggttgt
gcaaggactcaacaacactatgaaggtgagctggagattaatgatttcccacagaatgct
cgttggagggtgacgcggagagaaactcttggttcgatatcggactggtctggagcagct
atcaccaccagaggtcagtttttcacgccaggacgtgtcccgggccatggggaacgcaag
ctttacttgttcattgaaaggactagtgaggagtctgttaaggcggcgaaaggtgagctc
atgcgtgttgttaatgacattactagtcaagccttgtcacttcccggaagatcatcacaa
catggtagatactctgtcttataa
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