Brassica rapa (field mustard): 103871953
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Entry
103871953 CDS
T03449
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 87F
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03015
mRNA surveillance pathway
brp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103871953
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
103871953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103871953
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
103871953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
103871953
NCBI-ProteinID:
XP_009148538
LinkDB
All DBs
Position
A06:complement(4725560..4728207)
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AA seq
575 aa
AA seq
DB search
MNQENAGYGDNQKLLHQGSGTIPALADEELMGEDDDYDDLYSDVNVGESFFQAHNQPQAP
AQVGGSIQAQNSNVSEPRMAVVSGGGVEGKYGNGISGPETRSDTYPQGSSFGPKGMNVDV
QSNQPNKVNPQGSTSIVLNTHSFSGNAVNVPEPPPVHNAYGGAPQGAQQIPVSQTSVNPS
AMVNRSPTQPFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKG
YCQVEFYDSAAAAACKEGMNGFVFNGKACVVAFASPETLKQMGANFTGRNQGQNQMQNRR
PLNEGMGRGNNNNNNNNNMNTQNGDGGRNFGRGGGFARGGQGMGNRGGHWGGAARGRGMN
NMANGAGAGPYGGPGLAGPAFGGMMHPQGMMGAGGFDPTFMGRGGGYGGFPGLAYPGMPQ
PYPGVNPMGMVGIAPHVNPAFFGGAGMGTMGNAGMNGVHAGGMWNEASGGGGGGEEGGSE
YGGYEDENQEKEEKPSREKERSTTERDWSESSGGDRRHKSHREEKDSHREYKHRDSEEYD
RGQSSSKSRSRSRMSEDDHRSRSRDADYGKRRRGD
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagaaaacgctggttatggagataatcagaagctacttcaccagggaagcggg
actattcctgctcttgctgatgaagagctcatgggggaagatgatgactatgatgatctc
tatagcgatgttaatgttggtgagagcttcttccaagctcataatcaacctcaagcacca
gctcaagtcggtggaagtattcaagctcagaatagtaatgtttctgaaccgagaatggca
gttgtatctggaggtggagttgaagggaagtatggtaatgggatcagtggacctgagaca
agatcagatacttatccgcaaggatcttcttttggaccaaaagggatgaatgttgatgtc
cagtccaaccaacccaacaaagttaatccacaaggatcaacatctattgtgttgaacacg
catagtttttcagggaatgctgtgaatgtgcctgagcctcctcctgtgcataacgcttat
ggtggtgctcctcaaggtgctcagcagattcctgttagccagacgagtgtgaatccaagc
gcaatggtgaacagaagccccacgcagccgtttgttgtggacaatgggaacaccatgctt
ttcgtgggggagttgcactggtggacgacggatgcagagattgagagtgttctttctcag
tatggaagagtgaaagagatcaagtttttcgacgagagagttagtggtaaatccaaaggg
tattgtcaggttgagttttacgattcagctgctgcagctgcttgcaaagaaggaatgaat
gggtttgttttcaacggtaaagcatgtgttgtagcctttgcttctcccgagacgctgaag
cagatgggagctaacttcactgggaggaaccaaggacaaaaccaaatgcaaaacagaagg
cctttgaatgagggaatgggaagaggcaacaacaacaataacaacaacaacaacatgaat
acgcaaaatggagacggtggaagaaactttgggagaggtggtgggtttgcacgtggtggc
caaggaatgggaaaccgtggaggtcattggggtggtgcagcgagaggcagagggatgaac
aacatggctaacggtgctggtgctggaccgtatggcggccctggactcgctggtccagcg
tttggtggtatgatgcatccacagggtatgatgggagctggtgggtttgatcctacattc
atgggtcgtggtggtggttatggagggtttcctggtcttgcttaccccgggatgcctcaa
ccttatcccggtgttaatccaatgggaatggttgggattgctcctcatgttaatcccgcc
tttttcgggggcgcggggatgggaacgatgggtaacgcagggatgaacggagttcatgca
ggagggatgtggaacgaggctagtggaggaggtggtggtggtgaagagggtggctctgaa
tacggtgggtatgaagatgaaaaccaagagaaagaagagaagccatcacgtgagaaagag
cgttctaccacggaacgtgactggtctgagagcagtggtggtgatagaagacacaagagt
caccgtgaggagaaagatagtcaccgcgagtataagcaccgtgactctgaagagtacgat
agaggacagtcttcttccaagtctcgaagcagatcaagaatgtcggaagatgatcatagg
tccaggtcaagagatgcagactacggaaagcgaaggcgaggagactga
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