Brassica rapa (field mustard): 103872449
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Entry
103872449 CDS
T03449
Name
(RefSeq) serine/arginine-rich splicing factor SR45
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03013
Nucleocytoplasmic transport
brp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103872449
03015 mRNA surveillance pathway
103872449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103872449
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
103872449
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
103872449
NCBI-ProteinID:
XP_009149094
UniProt:
M4EB78
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Position
A06:complement(6683130..6686314)
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AA seq
398 aa
AA seq
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MAKPSRGRRSPSVSGSSSRSSSRSRSSPSRSISRSRSLSSSSSSPSRSVSSGSRSPPPRS
KSSAGPASRRGRSPPPPQSKGASSPSRKAAPVQESLVLHVDSLSRNVNEGHLKEIFGNFG
EVVHVDLAMDRAVHLPKGYAYVEFKAREGAEKAQLFMDGGQIDGNVVKAKFTLPPRQKVS
SPPKPVSSAPKREATKSDSAGADIEKDGPRRPRETSPQRKPVLSPRRRSPLPRRGASPRR
LPDSPPRRRPSSPIRRRGDTPPRRRAASPSSPPRRRRSPPRGSPRRIRGSPVRRRSPPPL
RRRSPPRRLRSPLRRSPIRRRSRSPIRRPVRSRSRSLSPRRGRGPAGRRGRSSSYSSSPS
PRRVPRKISRSRSPRRPLRGKRSSSNSSSSSSPPPRKT
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaccaagtcgtggacgtcgttcaccttccgtctctgggtcttcctctcgttcc
agctccagatctcgttcgagtccgtccaggtctatttcgcgctccagatcgctctcttct
tcttcttcttctccttccaggagcgttagctctgggagtcgcagtcctccacctcgttca
aaaagttctgctgggcctgctagtaggcgaggtcgctctcctcctcctcctcagtctaaa
ggagcctcttcaccctctaggaaagctgcacctgttcaagaatcacttgttctccatgtt
gattctctcagcaggaatgtgaatgaaggccatctcaaagaaatatttggcaactttggt
gaagttgtacatgtggatcttgccatggatcgggctgttcatcttccaaaaggatatgct
tatgttgagttcaaggcaagagagggtgctgagaaagctcagctgtttatggatggtggt
caaattgatggaaatgttgtcaaagcaaagttcacactaccaccgcgtcagaaagtatct
tcaccccctaaacctgtctcaagtgcaccaaaaagagaggctacaaaatctgatagtgcc
ggtgctgacattgagaaagatgggcccaggcgcccaagagagacttctccgcaacggaaa
ccagtactttctccaagaaggcgatcacctctgcctaggagaggcgcgtcacctaggaga
ttacctgattctccccctcgtcgaaggccaagctctcctatccgccggcgtggtgataca
ccacctagacgcagggctgcatcgccatcttctcctccaagacgacgtagatctcctcca
aggggctcccctagaagaatccgtggcagccctgttcgcagacggtctcctcctcctcta
agacgaaggtcacctccaaggagactacgcagtcctttaagaagatctccaatccgcaga
cgtagccgatccccaattcgtagacctgttcgctctcgttcaaggtcgctttcaccccgc
aggggacgaggtccagctgggagacgtgggaggtcatcttcatactctagttcgccaagt
cccagaagggttcctaggaagatttcaaggagccgcagtcctagaaggccactgagaggg
aaaagaagcagcagtaacagtagcagcagcagctcaccgcctcctcgcaaaacataa
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