KEGG   Bradyrhizobium amphicarpaeae: CIT40_25705
Entry
CIT40_25705       CDS       T05700                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brq  Bradyrhizobium amphicarpaeae
Pathway
brq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CIT40_25705 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brq03400]
    CIT40_25705 (ligD)
Enzymes [BR:brq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CIT40_25705 (ligD)
DNA repair and recombination proteins [BR:brq03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CIT40_25705 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: AWM03096
UniProt: A0A2U8PZ62
LinkDB
Position
complement(5869271..5871955)
AA seq 894 aa
MLQKLSTYRKKRDFEKTPEPSGKTEVAASKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFK
KGDLKFTLHGDKLHGSWVLVRMRNDRTGGKRANWLLIKHRDEFVREGAKNDILDDDKSVA
SGRAMEQIAEGKGRAPKPFMLAKGAKTKADAVWQSNRSEEAKGQTVKPAPRTALKGGKIV
KSKSAKKATTATNAKKVSEMPDFVPPQLCTLVERPPAGEGWCHEIKFDGYRVQLRVEDGK
ATLKTRKGLDWTGKFGSIAEEAAALPDAVIDGEIVALDHNGAPNFSSLQAALSDGKTDDL
IFFAFDLLFAEGQDYRRLPLGERKAQLKKLLEKRRRKSTQIRYVEHFESGGDAVLQSACK
LELEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGGHLA
FVGMVGTGFGADNVKRIMPSLKAMAAKESPFGGKNAPKKGREVHWLKPELVAEIEFAGFT
ADGNIRQAAFKGLRQDKPAEEVEAETPVDTELAKPKAGKRAAKAAKRSKDSGTAEVMGVV
ISKPDKELWPDGGDGEGVTKLDLARYFEAVGSWMIEHLKGRPCSIVRAPDGIGGETFFQR
HAMQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVF
DLDPAPDVEFAEVVAAAKEMRQRLADVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEA
KAFAQGVCQWMADDDPERYLLNMSKKMRTGKIFLDYLRNDRMSTAVAPLSPRARAGATVS
MPVTWAQVKSDLDPKRYTLRTVPGLLPRSKAWQGYDDAAASIKASIKRLAGKTK
NT seq 2685 nt   +upstreamnt  +downstreamnt
gtgctgcagaaactctcgacctaccgaaagaagcgtgacttcgagaagacgccggagcct
tcgggcaagacggaggtcgcggcatcgaagcagcggcgcttcgtgatccagaagcacgac
gccacccggctgcattacgatctcaggctcgaattcgacggtgtcttcaagtcctgggcg
gtgaccaagggtccctcgctcgatccacacgacaagcggctggcggtcgaggtagaagac
catccgctcgactatggcgatttcgaaggcacgattccggaagggcagtacggcggcggc
acggtgatgctgtgggatcgcggcacctgggagtcggaggatcccgaacgcggcttcaaa
aagggcgatttgaagttcaccctgcatggcgacaagctgcacggcagctgggtgctggtc
cgcatgcgcaacgaccgcaccggcggcaagcgcgccaactggctgctgatcaagcaccgc
gacgaattcgtccgagaaggtgccaagaacgacattctcgatgacgataaatccgtcgcc
tccggccgggcgatggagcagatcgccgaaggcaaaggccgcgcgccaaagccgttcatg
ctggccaagggcgccaagaccaaggccgatgcggtctggcaatccaaccggtccgaggaa
gccaaaggacaaacggtcaagccggcgccccgcacggcattgaagggcggcaagatcgtc
aagagcaagtcggcgaagaaggccacgaccgcgacgaatgccaaaaaagtctcggagatg
ccggacttcgtcccgccgcagctctgtacgctggtcgagcggccgccggccggcgagggc
tggtgccacgagatcaagttcgacggctatcgtgtgcagctccgggtcgaggatggcaag
gcgacgctgaagacgcgcaagggcctcgactggaccggaaagttcggctccatcgcggag
gaggcagccgcgctgccggacgcggtgatcgacggcgagatcgtcgcgctcgaccacaat
ggcgcgccgaacttctcttcgcttcaagctgcgttgtccgatggcaagactgacgacctg
atcttctttgcgttcgaccttctgttcgccgaggggcaggactaccgccggctgccgctc
ggcgagcgcaaggcgcagctcaagaagctgctggagaagcgcaggcgcaaatcgacccag
atccgctatgtcgaacatttcgagagcggcggcgatgcggtgctgcaatcggcctgcaag
cttgagctcgaaggcgtggtgtcgaagaagctggacgcgccctatcgctccggccgcaca
gaaagctggaccaaggcaaagtgccgcgccggccatgaggtcgtgatcggcggctacaag
acgaccaacggcaaattccgctcgctgatggccggcgtgcagcgcggcggtcatctcgcc
ttcgtcggcatggtcggcaccggcttcggcgcggacaacgtcaagcgcatcatgccgtcg
ctgaaggcgatggcggccaaggaaagtcccttcggcggcaagaacgcgccgaagaaaggc
cgcgaggtgcactggctgaagccggagctcgtcgccgaaatcgagttcgccggcttcacc
gccgacggcaatatccgccaggccgcgttcaagggcttgcggcaggacaagcctgccgag
gaagtcgaggcggagacgcctgtcgacaccgagctcgccaaacccaaggccggcaagcgc
gcagcgaaggcggcgaaacgatcgaaggactccggcacggccgaggtgatgggcgtcgtc
atctccaagccggacaaggagctgtggccggacggcggcgacggcgagggcgtgaccaag
ctcgatctcgcccgctacttcgaggcggtcgggagctggatgatcgaacatctgaagggg
cgtccgtgctcgatcgtgcgtgcgcccgatggcatcggcggcgaaacgttcttccagcgt
cacgccatgcaaggcacctcgaatttgctcgaactggccaaggtctccggcgatcgcaag
ccgtatctgcagatcgatcgcgtcgagggccttgctgcggtggcccagatcgggggcgtc
gagctgcatccgtggaactgcgcgccagacgcctacgatacgccgggccggctggtgttc
gatctcgatcctgccccggacgtggaattcgccgaggtcgtcgcggcggccaaggagatg
cggcagcggctcgccgacgtcgggatggagagcttctgcaagaccacgggcggcaagggc
ctgcatgtggtggtgccgctgcttcacggcgcgcgagacaaggtgagctggaaggaagcc
aaggccttcgcgcagggcgtctgccagtggatggcggacgacgatccagagcgctacctg
ctcaacatgtcgaagaagatgcgcacgggaaagatcttcctcgactatctccgtaatgac
cggatgtcgacggcggtggctccgctgtcgccgcgggcgcgggccggtgccacggtttca
atgcccgtcacatgggcgcaggtgaagagcgatctcgatccgaagcgctacaccctgcga
accgtgccgggcctgctgccgcggtcgaaggcgtggcagggctatgacgatgcggccgct
tcgatcaaggcgtcgatcaagaggttggcggggaaaacaaagtag

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