Bradyrhizobium amphicarpaeae: CIT40_25705
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Entry
CIT40_25705 CDS
T05700
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CIT40_25705 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brq03400
]
CIT40_25705 (ligD)
Enzymes [BR:
brq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CIT40_25705 (ligD)
DNA repair and recombination proteins [BR:
brq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CIT40_25705 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AWM03096
UniProt:
A0A2U8PZ62
LinkDB
All DBs
Position
complement(5869271..5871955)
Genome browser
AA seq
894 aa
AA seq
DB search
MLQKLSTYRKKRDFEKTPEPSGKTEVAASKQRRFVIQKHDATRLHYDLRLEFDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPERGFK
KGDLKFTLHGDKLHGSWVLVRMRNDRTGGKRANWLLIKHRDEFVREGAKNDILDDDKSVA
SGRAMEQIAEGKGRAPKPFMLAKGAKTKADAVWQSNRSEEAKGQTVKPAPRTALKGGKIV
KSKSAKKATTATNAKKVSEMPDFVPPQLCTLVERPPAGEGWCHEIKFDGYRVQLRVEDGK
ATLKTRKGLDWTGKFGSIAEEAAALPDAVIDGEIVALDHNGAPNFSSLQAALSDGKTDDL
IFFAFDLLFAEGQDYRRLPLGERKAQLKKLLEKRRRKSTQIRYVEHFESGGDAVLQSACK
LELEGVVSKKLDAPYRSGRTESWTKAKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGGHLA
FVGMVGTGFGADNVKRIMPSLKAMAAKESPFGGKNAPKKGREVHWLKPELVAEIEFAGFT
ADGNIRQAAFKGLRQDKPAEEVEAETPVDTELAKPKAGKRAAKAAKRSKDSGTAEVMGVV
ISKPDKELWPDGGDGEGVTKLDLARYFEAVGSWMIEHLKGRPCSIVRAPDGIGGETFFQR
HAMQGTSNLLELAKVSGDRKPYLQIDRVEGLAAVAQIGGVELHPWNCAPDAYDTPGRLVF
DLDPAPDVEFAEVVAAAKEMRQRLADVGMESFCKTTGGKGLHVVVPLLHGARDKVSWKEA
KAFAQGVCQWMADDDPERYLLNMSKKMRTGKIFLDYLRNDRMSTAVAPLSPRARAGATVS
MPVTWAQVKSDLDPKRYTLRTVPGLLPRSKAWQGYDDAAASIKASIKRLAGKTK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcagaaactctcgacctaccgaaagaagcgtgacttcgagaagacgccggagcct
tcgggcaagacggaggtcgcggcatcgaagcagcggcgcttcgtgatccagaagcacgac
gccacccggctgcattacgatctcaggctcgaattcgacggtgtcttcaagtcctgggcg
gtgaccaagggtccctcgctcgatccacacgacaagcggctggcggtcgaggtagaagac
catccgctcgactatggcgatttcgaaggcacgattccggaagggcagtacggcggcggc
acggtgatgctgtgggatcgcggcacctgggagtcggaggatcccgaacgcggcttcaaa
aagggcgatttgaagttcaccctgcatggcgacaagctgcacggcagctgggtgctggtc
cgcatgcgcaacgaccgcaccggcggcaagcgcgccaactggctgctgatcaagcaccgc
gacgaattcgtccgagaaggtgccaagaacgacattctcgatgacgataaatccgtcgcc
tccggccgggcgatggagcagatcgccgaaggcaaaggccgcgcgccaaagccgttcatg
ctggccaagggcgccaagaccaaggccgatgcggtctggcaatccaaccggtccgaggaa
gccaaaggacaaacggtcaagccggcgccccgcacggcattgaagggcggcaagatcgtc
aagagcaagtcggcgaagaaggccacgaccgcgacgaatgccaaaaaagtctcggagatg
ccggacttcgtcccgccgcagctctgtacgctggtcgagcggccgccggccggcgagggc
tggtgccacgagatcaagttcgacggctatcgtgtgcagctccgggtcgaggatggcaag
gcgacgctgaagacgcgcaagggcctcgactggaccggaaagttcggctccatcgcggag
gaggcagccgcgctgccggacgcggtgatcgacggcgagatcgtcgcgctcgaccacaat
ggcgcgccgaacttctcttcgcttcaagctgcgttgtccgatggcaagactgacgacctg
atcttctttgcgttcgaccttctgttcgccgaggggcaggactaccgccggctgccgctc
ggcgagcgcaaggcgcagctcaagaagctgctggagaagcgcaggcgcaaatcgacccag
atccgctatgtcgaacatttcgagagcggcggcgatgcggtgctgcaatcggcctgcaag
cttgagctcgaaggcgtggtgtcgaagaagctggacgcgccctatcgctccggccgcaca
gaaagctggaccaaggcaaagtgccgcgccggccatgaggtcgtgatcggcggctacaag
acgaccaacggcaaattccgctcgctgatggccggcgtgcagcgcggcggtcatctcgcc
ttcgtcggcatggtcggcaccggcttcggcgcggacaacgtcaagcgcatcatgccgtcg
ctgaaggcgatggcggccaaggaaagtcccttcggcggcaagaacgcgccgaagaaaggc
cgcgaggtgcactggctgaagccggagctcgtcgccgaaatcgagttcgccggcttcacc
gccgacggcaatatccgccaggccgcgttcaagggcttgcggcaggacaagcctgccgag
gaagtcgaggcggagacgcctgtcgacaccgagctcgccaaacccaaggccggcaagcgc
gcagcgaaggcggcgaaacgatcgaaggactccggcacggccgaggtgatgggcgtcgtc
atctccaagccggacaaggagctgtggccggacggcggcgacggcgagggcgtgaccaag
ctcgatctcgcccgctacttcgaggcggtcgggagctggatgatcgaacatctgaagggg
cgtccgtgctcgatcgtgcgtgcgcccgatggcatcggcggcgaaacgttcttccagcgt
cacgccatgcaaggcacctcgaatttgctcgaactggccaaggtctccggcgatcgcaag
ccgtatctgcagatcgatcgcgtcgagggccttgctgcggtggcccagatcgggggcgtc
gagctgcatccgtggaactgcgcgccagacgcctacgatacgccgggccggctggtgttc
gatctcgatcctgccccggacgtggaattcgccgaggtcgtcgcggcggccaaggagatg
cggcagcggctcgccgacgtcgggatggagagcttctgcaagaccacgggcggcaagggc
ctgcatgtggtggtgccgctgcttcacggcgcgcgagacaaggtgagctggaaggaagcc
aaggccttcgcgcagggcgtctgccagtggatggcggacgacgatccagagcgctacctg
ctcaacatgtcgaagaagatgcgcacgggaaagatcttcctcgactatctccgtaatgac
cggatgtcgacggcggtggctccgctgtcgccgcgggcgcgggccggtgccacggtttca
atgcccgtcacatgggcgcaggtgaagagcgatctcgatccgaagcgctacaccctgcga
accgtgccgggcctgctgccgcggtcgaaggcgtggcagggctatgacgatgcggccgct
tcgatcaaggcgtcgatcaagaggttggcggggaaaacaaagtag
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