Brachybacterium sp. P6-10-X1: BH708_01155
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Entry
BH708_01155 CDS
T04713
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brx
Brachybacterium sp. P6-10-X1
Pathway
brx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BH708_01155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brx03400
]
BH708_01155
Enzymes [BR:
brx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BH708_01155
DNA repair and recombination proteins [BR:
brx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BH708_01155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
APX31560
UniProt:
A0A1P8NB62
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All DBs
Position
257705..261334
Genome browser
AA seq
1209 aa
AA seq
DB search
MTTNTLPATATRAPLRPLLEQLADGQDLTALRALVEEGSASGEGGSIVAATGLFPFAVAD
LARRATAESPLVVVTPTTRALEDLRSALSALIGTDHVAELPAWETLPHERLSPRADTVAR
RLATLRRLAHPESEDPVHVLLMPVRSLLQPIATGLGDLRAVRGTVGEDYPLEDLVRDLVD
AAYVRVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEIDDVRYFSVADQRSLDPAP
RGLDAPPCREILLTPQVRERARAAAEQLPGARDLLLRIADGIAADGMESLSPVLVDGMEQ
VADVLPAGSRFLVVDPERARARAEELVATTDEFLAAAWSSAAAGGGLPLDVGAASFVPLS
EAKGHAREGGRPWFSLAAFGLDADVDLTTTAHTHPGYSGKPGDAAKDLETRRADGWSVVA
TMVGPGGARHVAENLRAEGMPAVFSPDLEGPVAGGEAVVTVGPFPDGLVVEDLRLVLASE
RDLTGKSGARRGEERRMPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTRRAVGTGAKR
TTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSRARK
AIREIADELVRLYSARQSAPGHAFGPDTPWQRELEDAFEFVETPDQLSTLDDVKSDMEKT
VPMDRLILGDVGYGKTEIAVRAAFKAVQEGKQVAVLAPTTLLAQQHLDTFSERYTGFPVT
VRGLSRFQSPADSERTIEGIADGSVDIVIGTHRLLTGNVRFKDLGLLIVDEEQRFGVEHK
ETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSILATPPEERHPVLTYVGAQEDKQVT
AAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEAQLERVIIDFWE
RDFDVLVCTTIVETGLDIANANTLIVENADKFGLSQLHQLRGRVGRSSERAYAYFLYNAT
KPLTETAHDRLTTLATNTDLGAGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMV
GEAVAAFRGESSAPEKEIRVELPLDAHVPHDYIGSERLRLEAYSKLSAVREVSEIEQIRA
ELTDRYGVPPEPVEVLLDVARFRIDARTAGVDEVQAQGKMIRFAHLEVPDSAAMRMKRLY
PGTLLKPATRQVLVPRPMTSRFGGTELRDHELLEWARQVLRTLVPAAAEAMTAPTIPGEV
GSTDRGAGK
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgaccacgaacacgctccccgccacggcgacccgcgccccgctgcgcccgttgctcgaa
cagctcgccgacggacaggacctcaccgcgctgcgggcgctcgtcgaggaggggtccgcc
tcgggtgagggcggcagcatcgtcgccgcgacgggactgttccccttcgccgtcgcggac
ctcgcccgccgcgccaccgccgagagcccgctcgtggtcgtcacccccaccactcgtgcg
ctcgaggacctccgctcggcgctctcggccctgatcggcaccgaccacgtcgccgagctg
cccgcctgggagacactgccgcacgagcggttgtccccgcgcgccgacaccgtcgcgcgg
cgcctggcgaccctgcgccgcctcgcccaccccgagtccgaggacccggtgcacgttctg
ctgatgcccgtgcgctccctgctgcagccgatcgccaccgggctcggcgacctgcgcgcc
gtgcgtgggaccgtcggcgaggactatcccctcgaggacctggtgcgggacctcgtcgac
gccgcctacgtgcgcgtggacatggtcgagaagcgcggggagttcgccgtgcgcggcggc
atcctggacgtcttcccacccaccgagccgcatccggtgcgcgtggacctcttcggcgac
gagatcgacgacgtgcgctacttctccgtcgccgaccagcgctccctcgatcctgccccg
cgcgggctcgatgccccgccgtgccgggagatcctgctgaccccgcaggtgcgggagcgg
gcccgagcggccgccgaacagctgcccggggcccgcgacctgctgctgcgcatcgccgac
gggatcgccgccgacggcatggagtcgctgagccccgtcctggtcgatggcatggagcag
gtcgccgacgtcctccctgccggctcccgcttcctggtggtcgaccccgagcgcgcccgc
gcccgcgccgaggagctggtggccaccacggacgagttcctcgctgcggcttggtccagc
gccgccgcagggggcggtctcccgctcgacgtgggcgccgcgagcttcgtcccgctgtcc
gaggcgaaggggcacgcccgcgagggcggccgcccctggttcagcctcgccgccttcgga
ctggacgcggacgtcgacctcaccaccaccgcgcacacccaccccgggtactccgggaag
ccgggcgatgccgccaaggacctcgagacccggcgcgcggacggctggagcgtcgtggcc
accatggtcgggcccggaggtgcgcgccacgtcgcggagaacctccgcgccgagggcatg
ccggccgtgttctcccccgatctcgagggaccggtcgccggcggcgaggcggtcgtgacc
gtcggccccttccccgacggtctcgtcgtcgaggacctccggctggtcctcgcctcggag
cgcgacctgaccggcaaatccggggcccgccgcggcgaggagcgcaggatgccctcacgt
cggcgcaatgtcgtcgatccgctccagctgcgccccggcgaccacgtcgtccacgcccac
cacggcgtcggccgcttcgtcgagatgacccgccgcgccgtcggcaccggggcgaagcgc
accacccgcgagtacctggtcatcgagtacgccccgtcgaagaagggccagcccggcgat
cgcctgtacgtccccagcgaccagctggaccaggtcaccaagtacgtcggtggcgaggag
cccagcgtcaaccggatgggtggggccgactgggccaagaccaagtcccgcgcccgcaag
gcgatccgcgagatcgccgacgagctggtgcgcctgtactcggcccggcagtccgccccg
ggccacgccttcggccccgacaccccgtggcagcgcgagctcgaggacgccttcgagttc
gtcgagaccccggatcagctctccaccctcgacgacgtcaagtccgatatggagaagacc
gtcccgatggaccgtctgatcctcggcgacgtcggctacggcaagaccgagatcgccgtg
cgcgccgcgttcaaagccgttcaggagggcaagcaggtggccgtcctggcaccgacgacg
ctgctggcccaacagcacctggacaccttctccgagcggtacaccgggttcccggtcacg
gtgcgggggctctcccgcttccagagcccggcggattccgagcggaccatcgaggggatc
gccgacggcagcgtcgacatcgtcatcggcacccaccgtctgctgaccggcaacgtgcgc
ttcaaggatctcggtctgctgatcgtcgacgaggagcagcgcttcggcgtcgagcacaag
gagaccctcaaggcgctgcgcacgaacgtcgacgtgctggcgatgtccgccaccccgatc
ccacgtaccctggagatggccgtcaccggaatccgggagatgtcgatcctggccaccccg
ccggaggagcgccatccggtgctcacctacgtcggtgcccaggaggacaagcaggtcacc
gccgccatccgtcgcgagctgctgcgcgagggccaggtgttctacatccacaaccgggtc
gaggacatcgatcgcgtcgccgcccacctgcgggagctggttcccgacgcccgggtccag
gtcgcgcacggcaagatgaacgaggcccagctggagcgggtcatcatcgacttctgggag
cgtgacttcgacgtgctggtgtgcaccaccatcgtcgagaccgggctggacatcgccaac
gccaacaccctgatcgtcgagaacgcggacaagttcggtctctcccagctgcaccagctg
cgcggtcgcgtgggccgctcgagcgagcgtgcctacgcctacttcctctacaacgccacc
aagccgttgacggagaccgcgcacgaccgcctgaccacgctcgcgaccaacacggatctc
ggcgcgggcatgcaggtggcgatgaaggacctcgagatccgcggtgccgggaatctgctg
ggcggggagcagtccgggcacatcgccggagtcggcttcgacctgtacgtgcgcatggtg
ggggaggccgtggcggccttccgcggcgagagctcggcgccggagaaggagatccgggtc
gagctgccgctggatgcgcacgtcccgcacgactacatcggttccgagcggctgcggctg
gaggcctactccaagctctcggccgtccgcgaggtctccgagatcgagcagatccgcgcc
gagctcaccgaccgctacggcgtcccgcccgaaccggtcgaggtgctgctggacgtggcg
cgcttccggatcgatgcccggacagccggcgtcgacgaggtgcaggcccaggggaagatg
atccgcttcgcccacctcgaggtgcctgactccgccgcgatgcggatgaaacgcctctac
ccgggcaccctgctcaagcccgccacccgccaggtgctggtgccccgacccatgacctcc
cgcttcggtggcacggaactgcgggaccacgagctgctggagtgggcccgtcaggtgctg
cgcaccctcgtgcccgcggccgccgaggcgatgacggcgccgacgatcccgggcgaggtc
gggagcaccgatcggggcgcggggaagtag
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