Bacillus rugosus: M0696_07330
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Entry
M0696_07330 CDS
T08218
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bry
Bacillus rugosus
Pathway
bry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M0696_07330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bry03400
]
M0696_07330
Enzymes [BR:
bry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M0696_07330
DNA repair and recombination proteins [BR:
bry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M0696_07330
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UPV80489
LinkDB
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Position
complement(1428601..1430436)
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AA seq
611 aa
AA seq
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MAFTMQPVLTSSPPIGAEWRYEVKYDGYRCILRIHSAGVTLTSRNGLELTSSFPEITQFA
KTAFQYMEKDLPLTFDGEIVFLVNPCRSDFEHIQVRGRLKRPDKIQESANVRPCCFLAFD
LLERQGEDVSSLSYLDRKKSLYDLMSAAKLPVSPDPYAKETIQYIPCYDHFEPVWEMVTK
YDGEGIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGVMTPV
ASVSHGMRDEEKNAIRKIMEQHGHQTPSGEYTLEPSICASVQYLTILQGTLREVSFVSFE
FHMDWTECTYAQVIRHSKPVHPDLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLFPFLK
NRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLANQLALE
LHVPFQTIQSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLFDSFGITSYPKLSGNKGIQ
LYIPLSHEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNELGTVAAPLYWHEVQTSLTPAMFTIDTVVDRIKKQGCPFFDFYRNPQDEPL
SAILHQLKKKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcatttaccatgcagcccgtccttacttcgtcaccgccaataggagcagaatggcgg
tacgaagtaaaatatgacgggtaccgctgtattctccgcatccattcagcaggtgtgacc
ttaaccagcagaaatggcttggagcttaccagttccttccctgaaatcacacagttcgcc
aaaaccgcctttcagtatatggaaaaagatcttccgctgacatttgatggcgagattgta
tttttggtgaacccttgccgttcagattttgaacacattcaggtgcggggacgattaaaa
aggccagataagattcaggaatcggcaaacgtgcgtccgtgctgctttcttgcctttgat
ctgttagagcgccaaggagaagatgtatcgtctctttcgtatctggataggaaaaaatcg
ctgtacgatctcatgtctgcggcaaagctccctgtatctccagacccttacgcaaaggag
accattcagtatattccctgctatgaccattttgaaccggtttgggagatggttacgaaa
tatgatggagaaggaattgtagcgaagaaaacaaacagcaaatggctcgaaaagaagcgg
tcctccgattggcttaaatataaaaactttaaacaagcttatgtttgtataacagggttc
aacccaaacaatggatttctgacggtgtctgtgttaaaaaacggcgtaatgacgccggtt
gcctctgtctcacacgggatgcgcgatgaggaaaaaaacgccatacgcaagattatggaa
caacacggacatcaaacaccttcaggcgaatatacgcttgaaccatcaatttgtgcatcc
gttcaatacttaacgattctccaaggcacgttaagagaggtatcgtttgtcagttttgaa
ttccatatggactggacagaatgcacgtatgctcaggtcatacgccattccaaaccggtt
catccagatcttcagttcactagcttggataaaatcatatttgaaaagaataaaaaaaca
aaagaagattttattcagtacatgattgaagtcagtgactacctgttcccatttctaaaa
aaccgtgctgtcaccgtcatccgttatccgcatggatcaaggagcgagtcgtttttccaa
aaaaataaaccggactatgcgccggattttgttcaatctttctatgacggaagccatgaa
catattgtctgtgaggatatgtccactttattatggcttgccaaccagcttgctttggag
cttcatgtcccttttcaaaccattcaaagcaggcgtccggctgagattgttattgatttg
gacccgccttcacgagatgactttctcatggctgtacaggctgcaaatgaactgaagcgg
ctgtttgactccttcggcatcacatcgtatccgaagctgtccggcaacaagggcatccag
ctttacattcccttgtcccatgaggcatttacgtatgaagaaacacgacagtttacacag
ctaatcgctgagtactgcaccaatgcatttcccgagctatttacaacagaacgcttgatt
aaaaacaggcacggcaaattgtatctggattatttgcaacatgcagaaggaaaaacgatt
atctgtccttattcaacaagaggaaacgagcttggcactgtcgcggcaccgctctattgg
cacgaagtacaaacatccttaacacccgctatgtttacaattgatactgtagttgatcgg
attaagaaacagggctgcccattttttgatttttaccgtaacccgcaagacgaacctctt
agcgccattttgcatcagttgaagaaaaagagctga
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