Brachybacterium vulturis: CFK38_12850
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Entry
CFK38_12850 CDS
T05108
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brz
Brachybacterium vulturis
Pathway
brz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFK38_12850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brz03400
]
CFK38_12850 (mfd)
Enzymes [BR:
brz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFK38_12850 (mfd)
DNA repair and recombination proteins [BR:
brz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFK38_12850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
IstB_IS21
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ATG52307
UniProt:
A0A291GQ40
LinkDB
All DBs
Position
complement(2860257..2863868)
Genome browser
AA seq
1203 aa
AA seq
DB search
MTTQTTAPAPTTEHPPLRPLLEQLAGGRDLTAVRDLVAEGTESGEGGSIVAATGLFPFLV
ADLARRATAEQPLVIVTATTRAAEDLRAALSALVGTAHLVELPAWETLPHERLSPRADTV
AKRLSTLRRIAHPETEDPAHVVLMPVRSLLQPIAKGLGDLRPVRAAVGDTYPLEEIERDL
VDAAYVRVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEIDDVRYFSVADQRSLDP
APRGLDAPPCREILLSPEVRERARARAEELPGVRDLLLRIADGIAADGMESLSPVLVGEM
EQVADVLPAGARFLVLDPEKARARADELVATTEEFLAAAWSSAAAGGGLPIDVGAASFVP
LSEAKGHAREGGRAWFTLAAFGLDTDVDLTTASSTHPGYSGKPGDAAKDLERRRTEGWSV
ISTMVGPGGARHVAENLRAEGLPAVFTAELDGPVAPGEAVVTVGPFVEGLVDTDLQLILS
AERDLTGKSGARRGEERKMPSRRRNVVDPLQLRPGDHVVHAHHGVGRFVEMTSRAVGVGA
KRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSKA
RRAIREIADELVRLYSARQSAPGHAFGPDTPWQRELEDSFEFVETPDQLSTIEDVKADME
KSVPMDRLILGDVGYGKTEIAVRAAFKAVQEGKQVAVLAPTTLLAQQHLDTFAERYTGFP
VVVRGLSRFQNPADSRATIEGVADGSVDVVIGTHRLLTGNVRFKDLGLLIIDEEQRFGVE
HKETLKALRTHVDVLSMSATPIPRTLEMAVTGIRELSILATPPEERHPVLTYVGAQEDKQ
VTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVPDARVRVAHGKMNEHQLERVIVDF
WERDFDVLVCTTIVETGLDIANANTLIVEHADKFGLSQLHQLRGRVGRSSERAYSYFLYN
ATKPLTELAHDRLTTLATNTDLGAGMKVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
MVGEAVAAFRGESAAPEKEIRVELPLDAHVPHDYIGSERLRLEAYSKLSAVRESSEIDQI
RSELIDRYGTPPAPVEVLLDVARFRIDARAAGVDEIQAQGKMIRFAHLEVPDSAAMRMKR
LYPGTVLKPAVRQVLVPRPMTSRLGGTELRDHDLLEWAREVLRTLVPAAAETISAPAVRT
AAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgactacgcagaccaccgcccccgcgccgaccaccgagcaccccccgctgcgcccgctg
ctggagcagctggccggcggccgtgacctcaccgcggtccgagacctggtcgccgagggc
accgagagcggcgagggcggcagcatcgtcgcggccaccggcctgttcccgttcctggtg
gcggatctcgcccgccgggccaccgccgagcagccgctggtgatcgtcaccgcgaccacc
cgtgccgccgaggatctgcgggccgcgctgtcagccctggtgggcaccgcgcacctggtc
gagctcccggcctgggagaccctgccccacgagcggctctccccgcgcgccgacaccgtc
gccaagcggctgtcgaccctgcgccgcatcgcgcatcccgagacggaggacccggcgcac
gtggtgctgatgccggtgcgctccctgctgcagccgatcgcgaagggcctgggcgacctg
cgcccggtgcgcgcggcggtcggggacacctatcccctcgaggagatcgagcgcgacctc
gtcgatgccgcctacgtccgcgtcgacatggtcgagaagcgcggcgagttcgccgtgcgc
ggcggcatcctcgacgtcttcccgcccaccgaaccgcatccggtgcgggtggacctcttc
ggcgacgagatcgatgacgtccgctacttctccgtcgccgaccagcgctccctggaccct
gccccgcggggtctggacgccccgccctgccgcgagatcctgctgtcccccgaggtgcgt
gagcgcgcccgcgcccgcgccgaggagctgcccggggtgcgggacctgctgctgcggatc
gcggacggcatcgccgccgacggcatggagtccctcagcccggtgctggtcggggagatg
gagcaggtggccgacgtgctgcccgccggcgcccgcttcctggtcctggacccggagaag
gcgcgcgcccgggccgacgagctggtcgccaccaccgaggagttcctcgccgcggcctgg
tccagcgccgccgccggcggcggactgccgatcgatgtgggcgcggcgagcttcgtgccg
ctctccgaggccaaggggcatgcccgcgagggcggccgcgcctggttcacgctggccgcc
ttcgggctcgacaccgacgtcgacctcacgaccgcctcctccacccatcccggctactcc
ggcaagcccggggacgccgcgaaggacctcgaacggcgccgcaccgagggctggtccgtg
atctcgaccatggtcgggcccggcggcgcgcggcacgtcgccgagaacctccgcgccgag
gggctgcccgccgtcttcaccgccgagctcgacggacccgtcgcgcccggcgaggccgtg
gtcaccgtcggccccttcgtcgagggtctggtcgatacggatctgcagctgatcctctcc
gccgagcgggacctgaccggcaagtccggggcgcgtcgcggcgaggagcgcaagatgccc
tcgcggcgccgcaacgtcgtcgaccccctccagctgcgccccggggaccacgtcgtccac
gcccaccacggcgtcggccgtttcgtggagatgaccagccgtgccgtgggcgtcggtgcc
aagcgcaccacccgcgagtacctcgtcatcgagtacgcgccctccaagaagggccagccc
ggcgaccggctctacgtgcccagcgaccagctcgatcaggtcaccaagtacgtcggcggc
gaggagccgagcgtcaaccgcatgggcggcgccgactgggcgaagacgaagtccaaggcc
cgcagggcgatccgcgagatcgccgacgagctggtgcggctgtactccgcccgccagtcc
gcgcccgggcacgccttcggaccggacaccccgtggcagcgggagctcgaggactccttc
gagttcgtcgagacccccgaccagctctccacgatcgaggacgtcaaggcggacatggag
aagtccgtccccatggaccggctgatcctcggcgacgtcggctacggcaagaccgagatc
gcggtgcgcgccgcgttcaaggcggtccaggagggcaagcaggtcgccgtgctcgccccc
accaccctgctcgcgcagcagcacctggacaccttcgccgagcgctacaccggcttcccc
gtcgtggtgcgcggtctctcccgcttccagaacccggcggattcccgggccaccatcgag
ggcgtcgccgacggcagcgtcgacgtcgtcatcggcacccaccgtctgctcaccgggaac
gtgcggttcaaggacctggggctgctgatcatcgacgaggagcagcgcttcggcgtcgag
cacaaggagacgctcaaggcgctgcgcacgcacgtggacgtgctgtccatgtccgcgacc
ccgatcccgcgcaccctcgagatggccgtcaccggcatccgcgagctgtcgatcctggcg
accccgccggaggagcgccacccggtgctgacctacgtcggagcgcaggaggacaagcag
gtcaccgcagccatccgccgcgagctgctgcgcgaggggcaggtgttctacatccacaac
cgggtcgaggacatcgaccgggtcgccgctcacctgcgcgagctggtgcccgacgcccgg
gtccgggtcgcccacggcaagatgaacgagcaccagctggaacgggtcatcgtcgacttc
tgggagcgggacttcgacgtgctggtgtgcaccaccatcgtcgagaccggcctcgacatc
gccaacgccaacaccctcatcgtcgagcacgccgacaagttcggcctctcccagctgcac
cagctgcgcggccgggtggggcgttccagcgagcgggcctactcctacttcctctacaac
gcgaccaagccgctcaccgagctcgcgcacgatcgcctgaccaccctggccaccaacacc
gatctcggtgccggcatgaaggtggcgatgaaggatctcgagatccgcggcgccggcaac
ctgctgggcggggagcagtccggacatatcgccggcgtcggcttcgacctctacgtgcgg
atggtgggggaggccgtcgcggccttccgcggcgagagcgccgcgcccgagaaggagatc
cgcgtcgagctgccgctggacgcccacgtcccgcacgactacatcggttccgagcgactg
cgactggaggcctactcgaagctctcagcagtgcgggagagctccgagatcgaccagatc
cgctccgagctcatcgaccgctacggcaccccgcccgcgccggtcgaggtgctgctggac
gtggccaggttccggatcgacgcccgcgccgccggggtcgacgagatccaggcccagggc
aagatgatccgcttcgcccatctggaggtgccggactccgcggcgatgcggatgaagcgt
ctgtacccgggcaccgtgctcaagcccgctgtgcgtcaggtgctggtgccgcgcccgatg
acctcccgcctcggaggcaccgagctgcgggaccacgacctgctggagtgggcgcgggag
gtgctgcgcaccctcgtccccgccgcggcggagacgatcagcgcacccgcggtccggacc
gcggccgagtag
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integrated database retrieval system
