Brachybacterium vulturis: CFK38_15900
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Entry
CFK38_15900 CDS
T05108
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brz
Brachybacterium vulturis
Pathway
brz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFK38_15900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brz03400
]
CFK38_15900
Enzymes [BR:
brz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFK38_15900
DNA repair and recombination proteins [BR:
brz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFK38_15900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ATG52845
UniProt:
A0A291GRH9
LinkDB
All DBs
Position
complement(3536112..3538595)
Genome browser
AA seq
827 aa
AA seq
DB search
MASHEQHVEVDGHRLRLSNLDKVLYPATGTTKGEVIQYYHRIAPLLIPQASRRPATRKRW
VDGVGTAEKPGTVFFRKDLEDHAPDWLPRADLEHNDGISTYPLVDEPAVLVWLAQLAALE
IHTPQWRFDGDLEPAHPDRLVLDLDPGEGAGLPQCAQVASWCREILTDMGLEAYPVTSGS
QGLHLYAPLDGETTAREVSQVARRLARALEEDHPEEVISTQTRSQRAGKVLVDWSQNNGS
KTTVCPYSLRGRLRPTVAAPRTWEEIEDPDLAQLELDEVLARAEDGVDPIAPLGLASSAD
PSAAAPRDRLELYRAKRDPERTPEPVPAARAGGEAAQEALEDAEPMFVIQEHHASRLHWD
FRLQHSGVLVSWAVPKGPPLETEVNRLAVRTEDHPLEYGTFEGSIPKDEYGGGDVTIWDT
GAIEIEKWREGEEVIVVCHGAADGGLGGVPRRFAFIRTGGMGGRSRSAAAKEKAKDNWLL
HLMKDQPEAGDTNADTDTEIERGEPIAPMLATLGRRADIRDEDEWAFEMKWDGVRVIATV
AGGAVRLTSRGGKDMTATFPELAELHEAVDAALRTAGETVLDGEIVALDSRDRPSFSRLQ
QRLGLTRQRDVQRAREDVEVHVMLFDLLVRGGDSLLRRPYRERREALFAAVGATEHVQLP
HADHGDVDHAIELSQTLQLEGVMAKQESSVYQPGKRSRTWLKLKNARHQEVVVIGWRHGK
GERRGGIGSLLVAVPDAEGELHYAGRVGTGFTARDLEQIGGRLRSRARKTPPAADVPAAD
RRDAEWVRADLVGEVQHTERTEDSRLRHPVWRGWRPDKEAADVRWEA
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggccagccacgagcagcacgtcgaggtcgacggccaccggctgaggctgtccaacctc
gacaaggtcctctatcccgccacgggcaccaccaagggcgaggtgatccagtactaccac
cgcatcgccccgctgctgatcccgcaggcctcccgccgccccgccacccggaagcgctgg
gtggacggcgtgggcaccgccgagaagcccggcacggtgttcttccgcaaggacctcgag
gaccatgctccggactggctgccccgtgcggacctcgagcacaacgacggcatctccacc
tatccgttggtggacgagcccgcggtgctggtgtggctcgcccagctcgccgcgctcgag
atccacaccccgcagtggcgcttcgacggggacctcgagcccgcacaccccgaccgtctg
gtcctggacctcgaccccggcgagggcgcgggactgccccagtgcgcgcaggtcgcgtcc
tggtgccgcgagatcctcaccgacatgggactggaggcgtatcccgtcacctcgggctcc
cagggcctgcacctctacgccccgctggacggcgagaccacggcccgggaggtctcgcag
gtcgcgcgccgtctcgcccgcgccctggaggaggaccaccccgaggaggtcatcagcacc
cagacccggtcccagcgcgccggcaaggtgctcgtggactggtcgcagaacaacgggagc
aagaccaccgtctgcccgtactccctgcgcggtcggctgcgccccaccgtcgccgccccg
cgcacctgggaggagatcgaggaccccgatctcgcccagctcgagctggacgaggtgctc
gcgcgcgccgaggacggcgtcgacccgatcgcaccgctcggcctcgcctcgagcgccgac
ccgtcggccgccgcgccccgcgaccggctcgagctgtaccgcgccaagcgcgaccccgag
cgcacccccgaaccggtgccggccgcccgtgccgggggcgaggccgcacaggaggcgctc
gaggacgcggagccgatgttcgtgatccaggagcaccacgcctcgcgcctgcactgggac
ttccgcctgcagcactccggggtgctggtgtcctgggcggtgcccaaggggccgccgctg
gagaccgaggtgaaccgcctcgccgtgcggaccgaggaccatccgctcgagtacggcacc
ttcgagggcagcatcccgaaggacgagtacggcggcggcgacgtcaccatctgggacacc
ggcgccatcgagatcgagaagtggcgcgagggcgaggaggtgatcgtggtctgccatggt
gcggccgacggcggtctcggcggcgtcccgcgccgcttcgcgttcatccgcaccggcggc
atgggcgggaggtcccgctccgcggcggcgaaggagaaggcgaaggacaactggctgctg
catctgatgaaggaccagccggaggccggcgacaccaatgccgacaccgacaccgagatc
gagaggggcgagccgatcgcgccgatgctcgccaccctcggccggcgcgcggacatccgt
gacgaggacgagtgggccttcgagatgaagtgggacggggtccgcgtcatcgccaccgtc
gcgggcggggcggtgcggctcaccagccgcggcggcaaggacatgaccgcgaccttcccg
gagctcgccgagctgcacgaggccgtggacgccgcgctgcgcacggcgggggagaccgtc
ctggacggagagatcgtcgccctggacagccgcgaccggccctccttctcccgcctgcag
cagcggctcgggctcacccggcagcgggacgtccagcgggcccgagaggacgtcgaggtc
cacgtgatgctcttcgacctgctggtgcgcggcggggactcactgctgcgccgtccctac
cgcgaacgtcgcgaggcgctgttcgcggcggtgggcgccaccgagcacgtgcagctcccg
cacgccgaccacggcgacgtggaccatgcgatcgagctctcgcagacgctgcagctcgaa
ggggtgatggcgaagcaggagtccagcgtctaccagccgggcaagcgctcgcgcacctgg
ctcaagctcaagaacgcccgccaccaggaggtggtggtgatcggctggcgccacggcaag
ggggagcgccgcggcggcatcggctcgctgctggtcgcggtgcccgacgccgagggagag
ctgcactacgcgggccgggtcggcaccggcttcaccgcgcgcgacctcgagcagatcggg
ggccgcctgcgctcccgcgcccggaagacaccacccgccgccgatgtgcccgccgcggac
cgccgcgacgccgagtgggtgcgggcggacctggtgggcgaggtccagcacaccgagcgc
accgaggacagccggctgcgccaccccgtctggcgcggctggcgccccgacaaggaggcc
gcggacgtgcgatgggaggcctga
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