Bipolaris sorokiniana: COCSADRAFT_107399
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Entry
COCSADRAFT_107399 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K11292
transcription elongation factor SPT6
Organism
bsc
Bipolaris sorokiniana
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsc03021
]
COCSADRAFT_107399
03036 Chromosome and associated proteins [BR:
bsc03036
]
COCSADRAFT_107399
Transcription machinery [BR:
bsc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
COCSADRAFT_107399
Chromosome and associated proteins [BR:
bsc03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
COCSADRAFT_107399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HTH_44
HHH_7
Spt6_S1
SPT6_acidic
HHH_9
SH2
Tex_YqgF
NBD94
S1
SOAR
HHH_3
Motif
Other DBs
NCBI-GeneID:
19130027
NCBI-ProteinID:
XP_007695231
JGI:
Cocsa1_107399
UniProt:
M2TN40
LinkDB
All DBs
Position
Unknown
AA seq
1411 aa
AA seq
DB search
MSEFFDTIADVGSDEEEDEDFDGETGEAGKPRPSKTNGTAGIDDSSEEEDDDDEDRLRQE
GEGFIADDDDEEEEEEVAERRRRRKKKRKNREAEEALDDEDLDLIGVEVERPAEEQSRFK
RLKRGHKERVKSRGVDDIFSDDEVNEDYDEPRARLGDEFDDFIEDDKFEDEIEDDRDVTQ
PGINLITKGLQAAGLDEGAEEDYRAAFGDGTDYDWALEMQEAEEDEQAGDGRELQLKDVF
EPSQLQERMLTDEDNVIRETDIPERLQLARKPFKEIELTPEDMQARLTEEATWISNMLWP
KKGLPRYFLQPFEKAVRKVLEFINLEDYEVPFIFNHRKDYLIHAPSDNDFDDIDNPPPMD
ARPERLLNQADLWEVFDFDLKFRAFAEKRDALRQNYENLKSVYPEINDTEIDELSSRAIT
IEEIQELQDYLHYRYSQEINEVRQEVNGTQKRANNARSFFDKLRSSKANQLVKAVGITPE
DFAKKVDGTSRGAYTVDDPPYKVEELADQLAEAPETGATLLRSTKLLFVQDLQMCSRLRR
YLRGSFYQNAEIDCIRTDKGMRKITEDHPYYEFKYLRRVTFSDLQGRPDLFLKMLKAESE
GLVQVKISMGNYAHFKARLQEKIISDGVSEVSDTWNALRKELLNVALDKLQTVIANGVKE
TLRARCEDELAASARENYYNKLDQAPYKLKSAPLGSIPNVLCLSNGKGQRGDAIMWAYVE
NDGRVLEQGRLVEMRLGNAERGIPEGQDIEKLVDVIQRRRPDVIGVSGFSVETRKLYKDI
QEIISQRGLTGPAYEDEDTGDERNEPLEVIMVNNEVARLYHTSARAAAEFPKYPALTRYC
IALGRYLQNPLAEYASLGRDIVSIPFIPNQTLIPQEKLLDRLDTAMVDMVNLVGIDLPET
YDDKYLSKLIPYVCGLGPRKADRLIKAIQANSDEILSRFDLLGVSESRDLKAAMGPKVFQ
NCASFLYIPYDPTEESSDYLDYTRVHPEDYDLARKMVADALNMDEEDVKAETDEGGPSAV
VRKMVREETTDLVNDLALEDYAAEIERNFGQRKRATLETIRAELDNPYEEIRQIFALLSG
DEMFTMLTGETKESLYEGMVVPVTIKRTFPDHIEVKLECGIEGGVSESEFPEGVGSGGQE
PRHVYSSHQIVRARIVYLNRKALTAQLSLRDDLIRQPQKKPYDRAAGEWDEAQEMQDKKA
AEKEKEVASGRPNRVVNHPLFFSFNTVQAEEYLGGKETGDLVIRPSSKGFDHLVVTWKVS
NNAYQHLDVLEMNKANQFSLGKQLKIGKHTYSDLDELIVNHVEAMARKVTELTRDERFQP
GTREDTEKWLENYCEANPSRSMYAFCSMPKYPGHFWICFQMSAKGPKGAWGIKVVPNAFE
LQKHVYPDMVALKNGFKMLVSAAASKGPVRR
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaattcttcgacacaatcgccgacgtcggcagcgacgaggaggaggatgaggac
tttgatggcgagaccggtgaggctggcaagcccaggcccagcaaaacaaatggcacagcc
ggcatcgacgactccagcgaggaggaagacgacgatgatgaggaccgactgcgacaggaa
ggtgaaggcttcatcgccgatgacgacgacgaagaggaggaagaggaagtggcagagcgc
cggcgccggcgcaagaagaagagaaagaatcgtgaagccgaagaggctctcgacgacgaa
gatcttgacctgattggcgtcgaagtagaacgcccggccgaagaacagtcgagattcaag
cgcctcaagcgtggccacaaggagcgcgtcaagtcccggggtgtcgacgacatcttttcc
gatgacgaagtcaacgaagactacgatgagccgcgggcccggttgggcgacgaatttgac
gacttcatcgaggacgacaagtttgaagacgaaatcgaagatgaccgcgatgtcacacaa
ccaggcataaatctaatcaccaaggggctgcaagctgctgggctcgatgagggtgccgag
gaagactacagagctgcatttggtgatggtacagattacgactgggcgttggaaatgcaa
gaggccgaagaggatgagcaagctggcgatggccgcgaactgcaactcaaggacgtcttc
gaaccatcacaactacaggagcgtatgttgacggacgaagacaatgtcatccgcgaaacc
gacattcccgagcgcctgcaattagcccgaaagcctttcaaggagattgagctcacaccg
gaggacatgcaggcacgtctgaccgaggaggcaacttggatcagtaatatgctgtggcct
aagaagggtcttccacgatactttttgcagcctttcgagaaggccgtacgaaaggttctc
gagtttatcaacctggaagattatgaagttcccttcatcttcaaccaccgaaaagactac
ctcattcatgcgccgagcgacaacgattttgatgatatagacaatcctccacctatggat
gctcggccagagcgtctgctcaaccaggctgacttgtgggaggtctttgatttcgacctc
aagttcagggcttttgctgaaaagcgtgatgctctcaggcagaactacgagaacctgaag
agcgtctaccctgaaattaacgacactgagattgacgagttatcttccagggccattacc
attgaagaaatccaagagctccaggactacctgcattatcgatactcacaggagatcaac
gaggtccgacaagaagtcaacggaacacagaagcgtgccaacaacgctcgaagcttcttt
gacaagctgcgaagcagcaaggctaatcaacttgtcaaggcagttggcatcacacccgaa
gactttgcaaagaaggttgatggaacgagcagaggcgcgtataccgttgacgaccctcca
tacaaggtcgaggagctcgccgatcagcttgccgaagctccggaaacgggcgctaccctt
ttgaggtccacaaagctactgtttgtccaagatctacaaatgtgctcgcggttgcgccga
tatttgcgtggtagcttctaccagaatgccgaaattgactgcattcgcactgacaagggc
atgcggaagatcaccgaggaccatccctactacgagtttaaatacctccgcagagtcacc
ttttcggatcttcaaggtcgcccagatctgtttttgaagatgctcaaggctgaatctgaa
ggccttgtacaagtcaagatttccatgggcaactacgcacacttcaaggctcgtttgcaa
gagaagatcatctctgacggtgtcagtgaggtttctgatacgtggaatgccctccgtaag
gagctgctcaacgttgcacttgacaagcttcagactgtcattgcaaatggtgtcaaggag
actctgcgtgccaggtgcgaagatgagcttgcggcctcagcaagagaaaactactacaac
aagcttgatcaggcaccttacaagttgaagagcgcacctcttggctcaattcccaacgtc
ctctgtttgtctaacggtaagggtcagcgtggagacgccatcatgtgggcttatgtagag
aacgacggtcgtgtcctagagcagggtcgactagttgagatgcgccttggcaatgctgaa
cgcggtatccccgaaggacaagatatcgaaaagttggttgatgtcatccagcgtcgacgc
ccagatgtcattggtgtcagtggcttctccgttgagacacgcaagctgtacaaggatatc
caggaaattatcagtcagcgaggcctgactggccctgcgtacgaggatgaggataccggt
gacgagagaaacgagcctctggaggtcatcatggtcaacaacgaagttgcccgtttatac
cacactagtgccagggcggctgcagagttccccaagtaccctgcactcacaaggtactgc
attgccttgggaagatatctgcaaaacccacttgccgagtacgcatcgctcggccgcgac
attgtttctattcctttcattccgaaccagaccttgataccccaggagaagcttttggac
cgactagacactgccatggtcgacatggtcaacctcgttggtatcgacttaccagagact
tacgacgacaagtacttgtcgaaactaataccatatgtgtgcggtttgggacctcgtaag
gccgacaggctaatcaaggctatccaagccaatagcgacgagattctttcacgattcgat
cttctcggtgtatctgagtcgcgcgacctcaaggcggccatgggtcccaaggttttccaa
aactgcgctagtttcttgtatatcccttacgacccgactgaagagtcgtctgattacctg
gactacacgcgtgtacatcctgaggactacgatctggcacggaagatggtcgctgacgca
ctgaacatggacgaggaggatgtcaaggcggagactgatgagggcggtcctagtgccgtt
gtcagaaagatggtacgggaagaaaccactgaccttgtcaacgacctagctctggaagac
tacgccgccgagattgaaaggaacttcggacagcgcaagcgtgccacgcttgagacaatc
cgagccgaactggataacccttacgaagaaattcgacaaatctttgcactgctgtctggt
gacgagatgttcaccatgctgactggtgagacaaaggagtctctctatgaaggcatggtt
gttcccgttaccatcaagcggacattccccgatcacattgaagtcaaactcgaatgcggt
attgaaggtggtgtgtcggaatcagagttcccagaaggtgttggcagcggcggacaggag
cctcgtcatgtatactcaagtcaccagattgtgcgcgcgcgtatcgtctatctcaaccgc
aaagcccttactgcacagctgtcgcttcgagatgatctcatccggcaaccgcaaaagaag
ccttatgaccgtgcagctggcgagtgggacgaagcacaagagatgcaagacaagaaggca
gccgagaaggagaaggaggttgcatctggccgacccaaccgtgtcgtcaaccaccctctc
ttcttttctttcaacacagtccaagcagaagagtacctcggtggcaaggaaaccggcgat
ctcgtcatccggccctcttctaagggattcgaccacttggtcgtaacatggaaggtctcc
aacaacgcctatcaacatctcgatgtactcgaaatgaacaaggccaaccaattctcactc
ggcaagcagctcaagattggaaagcacacgtattctgatcttgacgagttgattgtcaac
cacgtcgaggccatggctcgcaaggtcacggagctcacccgagacgagcgattccagccc
ggtactcgggaagacactgaaaaatggctagaaaactactgcgaagccaacccctcacgc
tccatgtacgccttttgcagcatgcccaagtaccccggtcacttctggatctgcttccag
atgagtgccaagggacctaaaggtgcatggggcattaaagtagtgccgaatgcgtttgag
ctgcagaagcatgtgtatcctgatatggttgcgctgaagaatgggttcaagatgttggtt
agtgctgcggctagtaagggacctgtgaggaggtag
DBGET
integrated database retrieval system
