Bipolaris sorokiniana: COCSADRAFT_163118
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Entry
COCSADRAFT_163118 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSADRAFT_163118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_163118
Enzymes [BR:
bsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCSADRAFT_163118
Spliceosome [BR:
bsc03041
]
Complex A
U2 snRNP components
U2 related factors
COCSADRAFT_163118
Complex B
COCSADRAFT_163118
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
OLD-like_TOPRIM
Motif
Other DBs
NCBI-GeneID:
19132220
NCBI-ProteinID:
XP_007702975
JGI:
Cocsa1_163118
UniProt:
M2S3E0
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MATRHADSSRYDDRDRRRYSPRRDRSRDRDRDRRGDRYSGESRFRDDRDRRDRRDRDRDT
YYRRSRSPPRRRDRSRDRGDRYSRRDRDDDRDRRRRSTSRRPDSRSSITPAPDNRRDRLD
APPRDDRKKDPETQAKDKLAERAAKLAEWKKRNAERLAKEKTDTQGSGASPAGTAPATPS
AAAATPPPQAPASEAKLDTAKTKVPQKSVTEKLKQKQPEKSTFKLDASAAARPLDMAKPA
GKTVTAASNQSTAKGNGNIGSFGLKTKTAAEAEAETSRKAFLDEEGPTRKRKFQALPEFT
ANDEPEPEADGAEDDDAAMSGIGSDDEENNAELQARLEKRRADIANENNQDATMEEAPTV
QVPAADKMDVDETVGAEEDEIDPLDAFMADLTEPQPSRGAPSGQAMFADELEPVETSVEA
QDLLELRAAKKKKKEVATVDHDKVEYEPFRKSFYTEPLEVSQMTPEEVADLRHELDGIKV
KPDDVPRPVTKWAQMGLLQATMDVFTRVGYQKPTSIQAQAAPISLSGRDLIGVAKTGSGK
TLAFGIPMIRHILDQRPLKPSDGPIGLILAPTRELSLQIVHELKPFLSASGITIKCAYGG
QPISDQIAMIKRGGIHILCGTPGRLIDLMTANQGRVLSFRRITYVVLDEADRMFDMGFEP
QVMKILANVRPDRQTVLFSATMPKNMVALARKALNNPAEVTIGGRSKVAPEITQIISIVP
NSYEKKINQLLLHLGQLFSEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQ
TDRNEAISDFRQGVLSILIATSVAARGLDVPGLALVLNFDCPTHLEDYVHRCGRTGRAGN
KGTAITLIENPGQERFAIHLVKALKESGAEVPEKLQEMADTFHEKAKAGTEKYYGGFGGK
GLDRLDATRALEKKREKRQLKLEGIEDSDDEEEILPIVKKPEVTGPGAAKAAEGTTPAAE
VEDQPHWMKLLNSKIVVNKTERPEAAATGKPMSARERAMAAASKVDGRLSKKGMIHAGQP
IDNKGPDAGLYHSTIEINDFPQKARWAVTNRTNVAKILDQTGVSITTKGNFYPPGKQPGE
NDLPKLYILVEGDTENIVTQAMMELTRLLREGTIAAEDASTTRTATGRYSVV
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcgccacgctgattcctcaaggtacgacgaccgagatcgtcgacgctacagc
ccgcggcgcgacagatccagagacagagaccgagaccgtcgaggagaccgctacagtgga
gagagccgcttcagagatgacagggaccgccgggaccgtcgtgaccgggatcgcgacaca
tactaccgccgctcgcgctctccccctcgccgccgtgaccgatcacgagaccgtggagac
cgctacagcagacgggaccgcgacgatgacagagacaggcgcagacgctctacttcacgc
cggcctgactctcgttcgtcaatcacaccagcgccagataacagacgggatcgactagat
gctcccccgcgcgacgacaggaagaaagaccccgagacacaagccaaggacaagctcgcc
gaacgcgcggcaaagctggccgaatggaagaagcgcaatgctgagcgtcttgccaaagaa
aagacagacacacagggctctggtgcctcaccagctggcactgcgcctgcgaccccctcc
gctgctgctgcgacgccgcctccccaggccccagcaagtgaggccaagcttgacaccgct
aagactaaagttccgcagaagagcgttactgagaaactcaaacagaagcagcccgagaag
tcgaccttcaagctggatgcttctgctgccgcccgccccttggacatggccaaacctgct
ggcaaaacagtgacggccgctagcaatcaatcaacagccaagggcaacggcaacattggc
tctttcggcctcaagactaagacagcagcagaagccgaggctgaaacttcgagaaaagcc
ttcctcgacgaagaaggcccaacgcgcaagcgcaagtttcaagccctccccgaatttact
gcgaacgacgaacctgaacccgaagctgacggtgccgaagacgatgacgctgcaatgagt
ggcattggaagtgatgatgaagagaacaatgcggagctccaggctcgcctcgagaagcgt
cgcgcggatatcgccaacgagaacaaccaagacgctaccatggaagaagcacctaccgtc
caagtccccgccgccgacaagatggacgttgacgaaactgtaggggccgaagaagacgaa
atcgatcctctcgatgcctttatggccgacttgaccgaaccacaacccagccgcggtgca
ccttcgggccaggccatgttcgccgacgagctcgagcctgtcgagacctctgttgaggcg
caagatcttctcgaacttcgtgctgccaagaaaaagaagaaggaggttgccactgtcgac
catgataaagttgagtacgagccgttccgaaaatctttttacactgagccgctcgaggtt
tctcagatgacgccagaagaagttgccgatctccgtcatgagcttgacggcataaaagtg
aagccagatgatgtgcctcgtcccgtcaccaagtgggcccagatgggcttgctgcaggca
accatggacgtcttcactcgcgtaggctaccagaagcccacatctattcaggcacaagct
gctcccatttctctttctggacgtgacctcattggtgtcgcgaaaactggttctggaaag
acactcgcgttcggtatacctatgattcgtcacattcttgatcaacgcccactgaagccg
tctgatggtcctattggactgatccttgctcccacccgagagttgtcattgcaaattgtc
catgagctcaaaccgttcctctcagcttctggcataactatcaaatgcgcttacggtgga
cagcccatttccgaccagattgctatgattaagcgtggtggcatacacattctctgtgga
acacccggtcgcctgatcgatttgatgactgcaaaccagggacgtgtgctctccttccgc
cgcattacctatgttgttcttgatgaggctgatcgcatgttcgacatgggttttgaacca
caagtcatgaagattcttgcaaacgtgcgccccgaccgtcaaaccgtgctcttttcagca
accatgccaaagaacatggttgcattggcccgtaaagccctgaacaatccagcagaagtg
acaatcggtggtagatccaaagtggctcctgagattacccagatcatatccattgttcct
aatagttatgagaaaaagatcaaccagctgctcttgcatctcggtcagctcttttcagag
gatgagaatgcacaggtattgattttcaccgagcggcaggaaactgcggaagatttgttg
tccaagctctacaaggccaagtatttctctgttaacacgattcacggagctaaagatcag
accgatcgtaacgaagcgatcagtgatttcaggcaaggtgttctttctattctcattgcc
acgtcagtagcagcacgtggtctggatgtccccggtctggcacttgtcttgaactttgac
tgtccaactcacttggaagattacgttcataggtgcggtcgtactggtcgtgcaggtaac
aagggtactgctattacccttattgagaaccccggtcaagagcgttttgctattcatctt
gtcaaagcactaaaggagagcggagcagaagttcctgaaaagcttcaagaaatggcagac
acattccatgagaaggccaaggcaggtaccgaaaagtactatggtggctttggtggtaaa
ggtctcgatcgacttgatgcaactcgtgctcttgagaagaagcgcgagaagcgtcagctc
aagctggaaggtattgaagacagcgatgacgaagaagaaattctacccattgtcaagaag
cctgaggttactggtcctggcgcggccaaggctgctgaaggaactacacctgctgctgaa
gtcgaagatcaaccgcactggatgaagctgctcaacagcaagattgttgtcaataagacc
gagcgccccgaggctgcagcgactggcaagccgatgagtgcaagggagagagccatggcc
gctgcctccaaggtcgacggtaggctcagcaagaagggcatgatccatgcgggtcagcct
atcgacaacaagggtcctgacgccggtctctaccattcaactattgagatcaatgacttt
ccccagaaagctcgatgggccgtcaccaatcgaaccaatgtggccaagattctggatcag
actggtgtctcaattacgacaaagggtaacttttacccacctggcaagcagcctggtgag
aatgatcttcccaagctgtacattctggttgagggagatacggagaacattgtcacacag
gctatgatggaactcacccgcctcctgcgcgaaggtacaattgcggcagaagatgcatct
acgactcgtaccgccactggtcgatacagtgttgtttga
DBGET
integrated database retrieval system
