Bipolaris sorokiniana: COCSADRAFT_33389
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Entry
COCSADRAFT_33389 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_33389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_33389
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
COCSADRAFT_33389
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_8
TPR_12
TPR_19
TPR_14
TPR_11
TPR_16
TPR_9
E_motif
Motif
Other DBs
NCBI-GeneID:
19137155
NCBI-ProteinID:
XP_007695531
JGI:
Cocsa1_33389
UniProt:
M2T1V5
LinkDB
All DBs
Position
Unknown
AA seq
1143 aa
AA seq
DB search
MASHADSAHDLLDLDISTLRQFIELFPNEGLSKVIIGWLSSGIAKYPLTAEDDSKDGPDL
SEGGVALTQDVPVSQEDCLVLMTEGLSEAPKSPLAHCLLGDYYLFLEEYESAVETTRKGL
KYAAAEAKKTDLSFQKTRDALSSTLATALVYYQAPRNHLEAKGIFESILKRKPQFTSALI
GIGLVLEEEEEYEKAFQFLEQALQQDPSNGRIGAESAWCQALAGDYKTGLEKLQQYLDYP
QLDATKQRGRELRAQTLYRIGVCLWELDHSKAARKDRQRTYAKLLAAIKANPNYAPAYTL
LGIFYEDYNKDRKRARQCFQKAFELSPSEIVAAERLARLFANQGEWDIVEVIAQRVVDSG
KARQTPGSKRKGISWPYSALGVVQMNKQEYQKSIVSFLSALRISPDDYYSYVGLGESYHN
SGRYNSASRAFNYAENPTDGVVMKRSDEEGWFTKYMLANVNRELSEFDEALAGYEAVLAV
RPKEFGVSIALLQTLVEKAWHCVETGFFGEAADSVTRGIEVADTITEYKPDAFNLWKAVG
DACSIFSWVQDKLDQCPFELVVKVLQSKSDMDLDFDAHKDIDGLGQAELASLSTNRDSIL
TKVLKAAILAQKRAIVSCAHDIHAQAVAWYNLGWTEYRAHVCLEQESGEDSKLTTYLRAA
MKCFKRAIELEAGNSEFWNSLGVITTTLSPKVAQHAFVRSLHLNERSVHTWTNLGALYLL
QNDTELAHAAFSRAQSQDPDYSLAWVGEGIIALLTGDSNEALSHFTHAFELSESSLLLTK
RQYAVSAFDFLVSSPSSSSDITSLIQPLFALQQLSIQAPYDIPHRHLAALFLERVGNYDA
SVTALDMVNETVEQEYEKTESMKSLVRVAQAKTDLARNLLAIGSDGMAVEDAETALDLLS
EIQSDSKQTALSKDQIAKTKLSARLTAGLAHYFYGSFDAAIAYFRRALETTGANPDIICI
LAEVLWAKGGKNEKQVARDQLFAAIEKHDGHVGLLTLIGAMTVLDDDLETMEAIKDDLNR
MRTNKDLSDHQLARVEKVMEAISISLGGEEQELDEARRSVMLAPFKHTGWAELADATGGN
EFASTLARETAMRNAPPKGSLGAASLAGAMNSTGDVGDVQRAIVLAPWCKDNWGGLSQCI
QSA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacacgcagacagcgcacatgacttgctggatctggacatctcaacattacgg
caattcatcgagctattcccgaacgagggtctatcaaaagtcataataggctggctcagc
agtggcatagcaaaatacccgcttactgcagaggatgattcaaaagacgggccggacttg
agtgaaggcggggtagcccttacccaagatgttccagtctcacaggaagattgcctggtg
ttgatgaccgaaggtcttagcgaagctccaaagtctcccctagctcactgccttctcgga
gattattacctgttccttgaggagtatgaaagtgcagtcgagacgaccaggaaaggtctc
aagtacgcggctgcggaggccaaaaagactgatttgtcgttccaaaagacacgtgatgct
ctgagcagcaccctcgccactgctttggtctactaccaagcaccaagaaaccacttggaa
gccaaaggtatcttcgaatccattttgaaacgcaaacctcagttcacctctgcactcatt
ggcatcggactggtcctagaagaagaggaagaatacgagaaagctttccaatttctagaa
caggcgttgcaacaagatccctcaaatggccgcatcggtgcggaatcagcctggtgtcag
gctttggctggggactacaagactggattggaaaagctccaacagtatcttgattaccct
caactcgatgcaaccaagcaacgtggccgtgagcttcgggcacagaccctctataggata
ggtgtttgtctatgggaactcgatcactcaaaagctgcgcgaaaagatcggcaaaggaca
tacgccaagctacttgcagccataaaagcaaatccaaattatgcccctgcatacacactc
ctcggtatattctacgaggactacaacaaagaccgcaagcgcgccaggcagtgtttccaa
aaggcttttgagctatcaccttccgagattgtggcagctgagcgattagcccgtcttttc
gctaaccaaggagaatgggacattgtagaagttatcgctcagcgagtggtagactctggt
aaggcccggcaaacacctggttcgaagcgaaagggcatcagttggccatactcagctctt
ggtgtggtccagatgaacaagcaagagtaccaaaagagtattgtatcatttctctcagca
ctgcgcatcagtccagacgactactactcctacgttggtcttggtgagagctatcataat
tctggacggtacaactcggcctctcgtgctttcaactatgccgagaaccccacagatggt
gtagtaatgaagagatcagatgaggagggatggttcacaaagtacatgttggccaacgtc
aatcgcgaactaagcgaatttgacgaagccctcgctggttacgaagcagtactcgcagta
cgaccgaaggagtttggcgtatccatcgcattactgcagacacttgttgaaaaggcatgg
cattgtgtcgaaactggattctttggggaggctgccgacagtgtgactcgaggtatcgaa
gttgccgacactatcacagaatacaagcctgacgccttcaatctgtggaaggctgtcgga
gatgcttgcagtatattcagctgggttcaggacaagcttgatcaatgtccattcgagctg
gttgtgaaggttctgcaaagcaagtcagacatggacctcgactttgacgcgcacaaagac
attgatggacttggtcaggcagaactggcttcactttccacgaatagggattcgatcctg
acaaaagttctcaaggctgcgattctggctcaaaagagagcaatcgtaagctgtgcacac
gacatacacgcacaggcggtagcttggtacaaccttggttggaccgagtacagagcccac
gtgtgcctggagcaggaatctggagaggactctaaactaacgacatatcttcgagcggcc
atgaagtgtttcaagcgtgcgattgagctcgaggctggcaactctgagttctggaattcg
cttggtgtaattacgacaacattaagcccaaaggtcgctcaacatgctttcgtcaggtca
ttgcacctaaacgagcgaagtgtgcacacttggacaaacctcggagcgctttatctgctc
cagaatgataccgagctcgcccacgcagccttctcaagggcgcagtcgcaagaccccgat
tactccttagcatgggtaggcgagggcatcattgcactacttactggcgattccaacgaa
gcactatcccactttactcacgcattcgaactctcagagtcgtcgctactcctcactaag
cgacagtatgcagtatcagcgtttgatttcctagtctcttccccgtcgtcttcgagcgat
atcacaagcctcatacagccgctctttgcgctccaacaactaagtatacaagcgccatat
gacatcccgcacagacatcttgcggcgttgttcttggagcgtgtaggcaattacgatgcg
tctgtgactgctttggacatggtcaatgagaccgtcgagcaggaatacgagaagaccgag
tcgatgaagtcactagttcgggtggcccaagccaagacggatttggcccgcaatcttctc
gccattggatccgacggaatggcagtagaggatgctgagactgctctcgatcttctttca
gagatccaaagcgattccaaacagactgctctgtccaaagaccagattgcaaagactaaa
ctatccgcccgtctcacagctggtcttgcacattacttctacggctcctttgacgcagcg
atagcatacttccgcagagccttggagacaactggcgcaaatcctgacattatttgcatc
ttggccgaggttctctgggccaaaggcggtaagaacgagaagcaagtagctcgtgatcag
ctcttcgctgccattgaaaaacacgacggccatgtgggtttactgacactcattggcgcc
atgacggtgcttgacgacgaccttgaaaccatggaagccatcaaggacgacctcaaccgc
atgcgtacaaacaaggatcttagtgaccaccaactggcgcgggtggaaaaggtcatggaa
gctatatctatcagtcttggtggtgaggaacaagaactcgacgaagcacgtcgaagcgtc
atgctagcgcctttcaagcatactggttgggcagagctcgcagatgctaccggcggtaat
gaattcgccagtacacttgcaagggaaacagcgatgcgcaatgcacctcctaaaggttcg
cttggtgctgctagcttggctggtgcaatgaatagtaccggagatgttggagatgtccag
agggcaatagtgttggcgccatggtgtaaggataactggggtggattgtctcaatgcatt
cagagcgcttag
DBGET
integrated database retrieval system
