KEGG   Bipolaris sorokiniana: COCSADRAFT_34693
Entry
COCSADRAFT_34693  CDS       T03124                                 
Name
(RefSeq) hypothetical protein
  KO
K12830  splicing factor 3B subunit 3
Organism
bsc  Bipolaris sorokiniana
Pathway
bsc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bsc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    COCSADRAFT_34693
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bsc03021]
    COCSADRAFT_34693
   03041 Spliceosome [BR:bsc03041]
    COCSADRAFT_34693
   03036 Chromosome and associated proteins [BR:bsc03036]
    COCSADRAFT_34693
Transcription machinery [BR:bsc03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     COCSADRAFT_34693
Spliceosome [BR:bsc03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    COCSADRAFT_34693
 Complex B
    COCSADRAFT_34693
 Complex C
   U2 SnRNP specific factors
    COCSADRAFT_34693
Chromosome and associated proteins [BR:bsc03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     COCSADRAFT_34693
    TFTC complex
     COCSADRAFT_34693
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 19137810
NCBI-ProteinID: XP_007697476
JGI: Cocsa1_34693
UniProt: M2SFV7
LinkDB
Position
Unknown
AA seq 1235 aa
MSLYALTVKQPTATQDAISGDFLGNGKQQILTASGSRLAILEVSRRQKGFQELYSQDVFG
IIRRIAKFRIAGGTKDHIVITTDSGRLVTYEYLPDEHTFKTLHFETFGKSGIRRVVPGEY
LAADPKGRAIMIASTEKNKLVYILTRSGQTDIAISSPLEAHKPQTLVYCLIGLDVGYDNP
MFATLEVDYSNSETDPTGEAYEEIKKELVYYELDLGLNHIVRKWSEPVDRTANTLFRVPG
GPSAPSGVLCCGEDSITYRRIFNNKSSVRRLAIPRREGATEDPNRKRMIVAGTLYSLKGG
DFFYLLQTEDGDVFKLTVDAPNGTVENIKIKYFDTIPVTTSICILRAGFVYAACESGDRI
LYELESLGDETDDPVFESSQFPVDPEASFAPPFFRPRALVNLTAVEAMPSLNPIMDMEVA
NPALEDAPQIYTINGTGGRSSFRTTRNALEVLDLIESPLPQNASDVWTTKLTSEDETDTL
IVLCLHSRTLVLKIGDDVEEASNTGFLPDTNTLGVQQFGEDCIIQIHPKGIRHIQGIQFP
NDDASATHASLTDWQPPAHRTIVACATNNRQVAIALSSGQILYFECDSDGSLAMAEEEIV
LESTINCLAMPDVPEGSVRAFFLAVGCSDQTVRIYNLSPDMEGNILRSISVQALTSPPSD
LTINLMTDKSSRGYSQFLHIGLRSGVYIRSVLDEMTGDIGDTRRRFLGPEPIKFAKVTVA
GEPAILAMTSRPWLGYTHPRTGVLQLTPLNYISFKSAWNFDGSQFKGIICVSANELRIFT
FNDLTDNTTYESIPLKYTPRKMVGYHDQGVFYVIQSDNNTISADRRQQLIAQSCGKKEDG
TNGSMETEQSNGAADSDEFPAVDFGYPRAQGSWASCIQVVDPVTEKTVTHTVELNGNISL
VSAALVFFESRNDEAFLAVGTAKDLSFTPYKFSSASIQIYKINPTGRELEFFHETTVSDP
PLALLAFKGKLLAGVGRHLCLYDCGMKSVLRKAQAPNCVPTRITGLKTQGSRLVVSDQAQ
SVTYVVHKDQVHPNRLIPFVDDTIARHTTASEMLDYDTTVGGDKFGNIWLVRCPQKVSES
SDESPDGSDLLVDKSYLGGTPNRLDLIAHYFTNDIPVSIQKTVLLSGGERVVFWAGLQGT
LGALIPFNSRRSHKMFQQLELQLRSDDKPLSGRDHLAFRSYFAPVKSVIDGDLIERFLVL
PRDKRESIAGQITGSEWTPSQIDESIWNMRGLYAF
NT seq 3708 nt   +upstreamnt  +downstreamnt
atgtcgctgtacgccttgacggtgaagcagcccacagcgacacaagatgccatttctggt
gacttcctcggaaacggcaagcagcagatccttactgcgagcggctcccggctggccatc
ctcgaggtttcgcggcggcagaagggcttccaagagctctactcgcaagatgtattcggc
atcatccgtcgcattgccaagttcaggattgcgggcggcaccaaagaccacattgtcata
accaccgactctggacgtttggttacgtacgagtaccttcctgatgagcacaccttcaag
acgcttcacttcgagacattcggcaagtctggaatacgacgtgtcgtgccaggcgagtac
ctggcagccgacccgaaagggcgcgctatcatgattgcctcgacggagaagaacaagctg
gtctacatcctcacccgaagtggtcagaccgatattgccatctcctctccactggaggcg
cacaagccccagacacttgtctattgtcttatcggtcttgacgttggctacgacaacccc
atgtttgcaacgctcgaagtggattactcgaattccgagactgatcctacgggcgaggct
tacgaagagatcaagaaggagcttgtgtactatgagctggatctgggtctaaaccacatt
gtacgaaagtggtcagagcctgtcgaccgcacagcgaatactctcttccgggtacccgga
ggcccaagtgcgccgagtggtgtattgtgctgtggagaggacagcatcacataccgtcgc
atcttcaacaacaagtcaagcgttcgccgcttggcaattccacgccgcgagggtgctact
gaagatcctaaccggaagcgtatgattgttgctggtactctatactctctcaaaggtggc
gacttcttctatcttttgcagacagaggatggtgatgtcttcaagcttaccgttgatgct
cccaacggcacggtcgagaacatcaagatcaagtactttgataccattcctgtaacgaca
agtatttgcattctccgggcgggtttcgtctacgctgcgtgcgagtctggagaccgcatt
ttgtatgaactggagtcgctgggtgacgagactgatgacccagtttttgaaagcagtcag
tttcctgttgacccggaagcctcgtttgcacctccgttcttccgtcctcgcgctctggtc
aacctcactgcggtagaggctatgccaagtcttaacccgattatggatatggaagttgcc
aatcctgcattggaagatgcgcctcagatatacacaatcaacggtacaggtggccgaagt
tctttccgcaccacgaggaacgcgttagaggtcttggatctcatcgagtctcctctacca
cagaacgcttctgatgtatggacaacgaagctgactagcgaagacgaaacggatacactc
attgtcctttgcctccacagcagaacactcgtcttgaagattggggacgatgttgaggaa
gcctccaacactggtttccttccagatacaaacactcttggtgtacagcagtttggcgag
gattgcatcatccaaatccaccccaagggtatccgtcacattcagggcatccagtttccc
aatgacgatgcgagcgcaacacacgccagcctgactgattggcaacctcctgcccaccgc
accattgtagcttgtgcaaccaacaaccgccaagtcgcaatcgccctcagctctggtcag
attctgtactttgagtgtgattctgatggttcgcttgccatggcggaagaagagattgtc
ttggaaagcaccatcaactgccttgcgatgcccgatgtcccagagggtagcgtacgagcc
ttcttcctggctgttggctgcagtgaccaaacggtcaggatctacaatctgagtcctgac
atggagggcaacatcttgcgaagcatctctgtccaagcacttacatcacccccaagcgat
ttgaccatcaaccttatgacggacaagtcgtcccgtgggtacagccaattccttcacatt
ggcctgcgaagtggtgtgtacattcgatcggtactggatgaaatgactggtgatattggc
gatacccgtagacgcttcctcggccctgagcctatcaaattcgcaaaggtcactgttgcc
ggtgagcccgctattctggcaatgacttcgcggccatggctaggctacactcatcctcgc
accggagtcttgcagctgacgccactgaactacatttcattcaagtccgcatggaacttt
gatggctcacaattcaagggaataatctgcgtgagcgctaatgagttacgaattttcacg
ttcaacgatttgacggacaataccacttatgaaagtataccattgaagtacacccctagg
aagatggtcggataccatgaccagggcgtgttctacgtaattcagagcgataacaacacc
attagtgctgatcgaaggcaacagctaattgcacaaagctgtggaaagaaggaggacggc
accaatggttcaatggagactgagcagtccaatggtgcagctgacagcgacgaattccct
gcagtagacttcggttatccaagggctcagggcagttgggcatcttgcatccaagtagtc
gatcccgtcactgagaagacggtcactcacactgtcgagctcaacggcaacatatccctt
gtcagtgccgctctagttttctttgagagccgtaacgatgaagcattccttgctgttggt
actgcaaaagacctgagcttcacaccatacaagttctcgtctgcctcgatccagatatac
aagatcaacccaactggccgcgagctggagttcttccacgaaactactgtcagcgatcca
cctctggcattactggctttcaagggcaagttgctcgctggtgtcggacgtcacctatgt
ctttatgattgcggtatgaagtcagtcctacgcaaagctcaggcacccaactgtgtaccg
acacgcatcacgggtctcaagacacagggtagccgattggtcgtttccgatcaagcacag
tcggtcacgtacgtcgtgcataaagaccaggttcaccctaatcgcctgatccctttcgtt
gatgacaccatcgctcgacataccacggcctcagagatgctagactatgacaccactgtg
ggcggtgacaagtttggcaacatctggcttgtgcgctgcccacaaaaggtttccgaatct
tctgacgagtcgccagacggctctgatctgcttgtcgacaagagctatcttggcggtact
cctaataggctcgacctgatcgcacattacttcaccaatgacatcccggtgtcaatacag
aagacagtcttgctatcaggtggtgaacgtgtcgttttctgggctggtcttcaaggcacc
cttggcgctctcatccccttcaactcacgccgttcacacaagatgttccagcagctcgag
ctccaacttcgctctgatgacaagccactgtccgggcgcgaccatctcgctttccgtagc
tactttgcacctgtcaaaagtgtcattgatggcgatctcattgaacgcttcctagttctt
ccccgtgacaagagggagagcattgctggtcaaattactggttcggaatggactcccagc
cagatcgatgagtccatttggaacatgaggggcttgtacgccttctag

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