Bipolaris sorokiniana: COCSADRAFT_34693
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Entry
COCSADRAFT_34693 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12830
splicing factor 3B subunit 3
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCSADRAFT_34693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsc03021
]
COCSADRAFT_34693
03041 Spliceosome [BR:
bsc03041
]
COCSADRAFT_34693
03036 Chromosome and associated proteins [BR:
bsc03036
]
COCSADRAFT_34693
Transcription machinery [BR:
bsc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
COCSADRAFT_34693
Spliceosome [BR:
bsc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
COCSADRAFT_34693
Complex B
COCSADRAFT_34693
Complex C
U2 SnRNP specific factors
COCSADRAFT_34693
Chromosome and associated proteins [BR:
bsc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
COCSADRAFT_34693
TFTC complex
COCSADRAFT_34693
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
19137810
NCBI-ProteinID:
XP_007697476
JGI:
Cocsa1_34693
UniProt:
M2SFV7
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MSLYALTVKQPTATQDAISGDFLGNGKQQILTASGSRLAILEVSRRQKGFQELYSQDVFG
IIRRIAKFRIAGGTKDHIVITTDSGRLVTYEYLPDEHTFKTLHFETFGKSGIRRVVPGEY
LAADPKGRAIMIASTEKNKLVYILTRSGQTDIAISSPLEAHKPQTLVYCLIGLDVGYDNP
MFATLEVDYSNSETDPTGEAYEEIKKELVYYELDLGLNHIVRKWSEPVDRTANTLFRVPG
GPSAPSGVLCCGEDSITYRRIFNNKSSVRRLAIPRREGATEDPNRKRMIVAGTLYSLKGG
DFFYLLQTEDGDVFKLTVDAPNGTVENIKIKYFDTIPVTTSICILRAGFVYAACESGDRI
LYELESLGDETDDPVFESSQFPVDPEASFAPPFFRPRALVNLTAVEAMPSLNPIMDMEVA
NPALEDAPQIYTINGTGGRSSFRTTRNALEVLDLIESPLPQNASDVWTTKLTSEDETDTL
IVLCLHSRTLVLKIGDDVEEASNTGFLPDTNTLGVQQFGEDCIIQIHPKGIRHIQGIQFP
NDDASATHASLTDWQPPAHRTIVACATNNRQVAIALSSGQILYFECDSDGSLAMAEEEIV
LESTINCLAMPDVPEGSVRAFFLAVGCSDQTVRIYNLSPDMEGNILRSISVQALTSPPSD
LTINLMTDKSSRGYSQFLHIGLRSGVYIRSVLDEMTGDIGDTRRRFLGPEPIKFAKVTVA
GEPAILAMTSRPWLGYTHPRTGVLQLTPLNYISFKSAWNFDGSQFKGIICVSANELRIFT
FNDLTDNTTYESIPLKYTPRKMVGYHDQGVFYVIQSDNNTISADRRQQLIAQSCGKKEDG
TNGSMETEQSNGAADSDEFPAVDFGYPRAQGSWASCIQVVDPVTEKTVTHTVELNGNISL
VSAALVFFESRNDEAFLAVGTAKDLSFTPYKFSSASIQIYKINPTGRELEFFHETTVSDP
PLALLAFKGKLLAGVGRHLCLYDCGMKSVLRKAQAPNCVPTRITGLKTQGSRLVVSDQAQ
SVTYVVHKDQVHPNRLIPFVDDTIARHTTASEMLDYDTTVGGDKFGNIWLVRCPQKVSES
SDESPDGSDLLVDKSYLGGTPNRLDLIAHYFTNDIPVSIQKTVLLSGGERVVFWAGLQGT
LGALIPFNSRRSHKMFQQLELQLRSDDKPLSGRDHLAFRSYFAPVKSVIDGDLIERFLVL
PRDKRESIAGQITGSEWTPSQIDESIWNMRGLYAF
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgtacgccttgacggtgaagcagcccacagcgacacaagatgccatttctggt
gacttcctcggaaacggcaagcagcagatccttactgcgagcggctcccggctggccatc
ctcgaggtttcgcggcggcagaagggcttccaagagctctactcgcaagatgtattcggc
atcatccgtcgcattgccaagttcaggattgcgggcggcaccaaagaccacattgtcata
accaccgactctggacgtttggttacgtacgagtaccttcctgatgagcacaccttcaag
acgcttcacttcgagacattcggcaagtctggaatacgacgtgtcgtgccaggcgagtac
ctggcagccgacccgaaagggcgcgctatcatgattgcctcgacggagaagaacaagctg
gtctacatcctcacccgaagtggtcagaccgatattgccatctcctctccactggaggcg
cacaagccccagacacttgtctattgtcttatcggtcttgacgttggctacgacaacccc
atgtttgcaacgctcgaagtggattactcgaattccgagactgatcctacgggcgaggct
tacgaagagatcaagaaggagcttgtgtactatgagctggatctgggtctaaaccacatt
gtacgaaagtggtcagagcctgtcgaccgcacagcgaatactctcttccgggtacccgga
ggcccaagtgcgccgagtggtgtattgtgctgtggagaggacagcatcacataccgtcgc
atcttcaacaacaagtcaagcgttcgccgcttggcaattccacgccgcgagggtgctact
gaagatcctaaccggaagcgtatgattgttgctggtactctatactctctcaaaggtggc
gacttcttctatcttttgcagacagaggatggtgatgtcttcaagcttaccgttgatgct
cccaacggcacggtcgagaacatcaagatcaagtactttgataccattcctgtaacgaca
agtatttgcattctccgggcgggtttcgtctacgctgcgtgcgagtctggagaccgcatt
ttgtatgaactggagtcgctgggtgacgagactgatgacccagtttttgaaagcagtcag
tttcctgttgacccggaagcctcgtttgcacctccgttcttccgtcctcgcgctctggtc
aacctcactgcggtagaggctatgccaagtcttaacccgattatggatatggaagttgcc
aatcctgcattggaagatgcgcctcagatatacacaatcaacggtacaggtggccgaagt
tctttccgcaccacgaggaacgcgttagaggtcttggatctcatcgagtctcctctacca
cagaacgcttctgatgtatggacaacgaagctgactagcgaagacgaaacggatacactc
attgtcctttgcctccacagcagaacactcgtcttgaagattggggacgatgttgaggaa
gcctccaacactggtttccttccagatacaaacactcttggtgtacagcagtttggcgag
gattgcatcatccaaatccaccccaagggtatccgtcacattcagggcatccagtttccc
aatgacgatgcgagcgcaacacacgccagcctgactgattggcaacctcctgcccaccgc
accattgtagcttgtgcaaccaacaaccgccaagtcgcaatcgccctcagctctggtcag
attctgtactttgagtgtgattctgatggttcgcttgccatggcggaagaagagattgtc
ttggaaagcaccatcaactgccttgcgatgcccgatgtcccagagggtagcgtacgagcc
ttcttcctggctgttggctgcagtgaccaaacggtcaggatctacaatctgagtcctgac
atggagggcaacatcttgcgaagcatctctgtccaagcacttacatcacccccaagcgat
ttgaccatcaaccttatgacggacaagtcgtcccgtgggtacagccaattccttcacatt
ggcctgcgaagtggtgtgtacattcgatcggtactggatgaaatgactggtgatattggc
gatacccgtagacgcttcctcggccctgagcctatcaaattcgcaaaggtcactgttgcc
ggtgagcccgctattctggcaatgacttcgcggccatggctaggctacactcatcctcgc
accggagtcttgcagctgacgccactgaactacatttcattcaagtccgcatggaacttt
gatggctcacaattcaagggaataatctgcgtgagcgctaatgagttacgaattttcacg
ttcaacgatttgacggacaataccacttatgaaagtataccattgaagtacacccctagg
aagatggtcggataccatgaccagggcgtgttctacgtaattcagagcgataacaacacc
attagtgctgatcgaaggcaacagctaattgcacaaagctgtggaaagaaggaggacggc
accaatggttcaatggagactgagcagtccaatggtgcagctgacagcgacgaattccct
gcagtagacttcggttatccaagggctcagggcagttgggcatcttgcatccaagtagtc
gatcccgtcactgagaagacggtcactcacactgtcgagctcaacggcaacatatccctt
gtcagtgccgctctagttttctttgagagccgtaacgatgaagcattccttgctgttggt
actgcaaaagacctgagcttcacaccatacaagttctcgtctgcctcgatccagatatac
aagatcaacccaactggccgcgagctggagttcttccacgaaactactgtcagcgatcca
cctctggcattactggctttcaagggcaagttgctcgctggtgtcggacgtcacctatgt
ctttatgattgcggtatgaagtcagtcctacgcaaagctcaggcacccaactgtgtaccg
acacgcatcacgggtctcaagacacagggtagccgattggtcgtttccgatcaagcacag
tcggtcacgtacgtcgtgcataaagaccaggttcaccctaatcgcctgatccctttcgtt
gatgacaccatcgctcgacataccacggcctcagagatgctagactatgacaccactgtg
ggcggtgacaagtttggcaacatctggcttgtgcgctgcccacaaaaggtttccgaatct
tctgacgagtcgccagacggctctgatctgcttgtcgacaagagctatcttggcggtact
cctaataggctcgacctgatcgcacattacttcaccaatgacatcccggtgtcaatacag
aagacagtcttgctatcaggtggtgaacgtgtcgttttctgggctggtcttcaaggcacc
cttggcgctctcatccccttcaactcacgccgttcacacaagatgttccagcagctcgag
ctccaacttcgctctgatgacaagccactgtccgggcgcgaccatctcgctttccgtagc
tactttgcacctgtcaaaagtgtcattgatggcgatctcattgaacgcttcctagttctt
ccccgtgacaagagggagagcattgctggtcaaattactggttcggaatggactcccagc
cagatcgatgagtccatttggaacatgaggggcttgtacgccttctag
DBGET
integrated database retrieval system