Bifidobacterium scardovii: BBSC_1439
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Entry
BBSC_1439 CDS
T03975
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsca
Bifidobacterium scardovii
Pathway
bsca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBSC_1439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsca03400
]
BBSC_1439
Enzymes [BR:
bsca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBSC_1439
DNA repair and recombination proteins [BR:
bsca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBSC_1439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AroM
Rop-like
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAQ31519
LinkDB
All DBs
Position
complement(1719802..1723398)
Genome browser
AA seq
1198 aa
AA seq
DB search
MADKANQSNGAACERHLALINGSLSGILERLDADPSFHALAAGRVDRDDAAAADPSIVVG
APAGLRPALAAAVAARRPVVFVVASGREAEDTVDALRSWYGGDPNDIAQLEAWETLPHER
LSPRADTVANRMAVFRRLAHPSGTNPMFGPIRILVVPVRSLIQPVVRGLGDVEPLVFTAG
EELALDEAARRLVENSYTRVDLVMDRGEFAVRGGIIDVFPPTAPHPVRIEFFGDEIDTIR
EFHASDQRTYGEPKRTIWATACRELQLTEAIRGRARRLIGQIPNAEDMLESIANAIPVEG
MESLMPALVDDMEPVTGMLDKRAVVMLSDPEKLRRSAEDLSKTANEFLAASWHVAASGHG
AGAPISFDRASFLDFDETISALEYANHDIYRLTSFGVDASLPGHVSLAAANPGAYRGDEA
KAASGIEGLIGEGIDVTVTAAAAGTLARLKRAINETGIASFAVIRSQAIDGFVDTAAKVA
LLTERDLTGRTSAAGQAKTPKRRRKAIDLMELKTGDYVVHEQHGIGRFVGMRQRTIGTGA
NRTTREYLVIEYAPSKRGAPADKLFIPTDQLDQISKYIGAEAPKLNKLGGSDWAATKAKA
RKHVHEIAEDLVKLYSARQRTPGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKADME
KPVPMDRLICGDVGFGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHYETFAERYEGFP
VTIAAMSRFQTAKEINETIEGLESGGVDIVISTHKLLNPKIKFKDLGLVIIDEEQRFGVE
HKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQ
VTAAVRRELLRGGQVFYVHNRVQDIAKTAARIHELVPEARVGIAHGKMGEKQLDQIIRDF
WHRDIDVLVCTTIIETGLDISNANTLIVDRADRFGLSQLHQLRGRVGRGRERAYAYFLYD
PSKPLTQQSHDRLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYIR
MVSEAVEQYKEPERTEPLAVSIDLPIEASIPVDYIDSDKLRLEAYRKLAAARTEQDLKDL
AEELTDRYGKLPEEFETLFGVARLRAKARKLGISEIIAQGRNVRIAKVDPPESIQMRINR
IYKGAQYRPVTHTYLIPTPFAGSLGAGPMPGEQVMDWTSDLLNDFAWTPSLNKRQSRL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaggcgaaccagtcgaacggcgccgcgtgcgagcggcacctcgccctgatc
aacggatcgctgtcgggcatcctggaacggctcgacgccgatccgtccttccatgcgctg
gccgccgggcgcgtcgaccgggacgacgcggcggccgccgacccgtcgatcgtcgtcggc
gctcccgcgggcctgcggccggctctggccgccgccgtggccgccagacggccggtcgtg
ttcgtcgtcgcctcgggccgcgaggccgaggacaccgtggacgcgctgcgctcgtggtac
ggcggcgatccgaacgacatcgcgcagctcgaggcgtgggagacgctgccgcatgagcgg
ctgagcccgcgcgccgacaccgtggcgaaccgcatggccgtgttccgccgtctggcgcac
ccgagcgggacgaatccgatgttcggcccgatccgcatcctcgtcgtgccggtccgttcg
ctcatccagcccgtggtccgtggcctgggcgacgtggagccgctcgtgttcacggccggc
gaggagctggcgctcgacgaggcggcccgccgtctggtcgaaaactcgtacacgcgcgtt
gatctggtcatggaccgcggcgaattcgcggtgcgcggcggcatcatcgacgtgttcccg
ccgaccgcgccccacccggtgcgcatcgagttcttcggcgacgagatcgacacgatccgg
gagttccacgcctccgaccagcgcacctacggcgagcccaagcgcacgatctgggccacc
gcctgccgcgagctgcagctcaccgaggcgatccgcggccgcgcgcggcggctgatcggc
cagatcccgaacgccgaggatatgctcgaatcgatcgccaacgcgattccggtcgagggc
atggaatccctgatgcccgcgctcgtggacgacatggagccggtgaccggcatgctggac
aagcgcgcggtcgtgatgctctccgacccggagaagctgcgccgttccgccgaggacctg
tccaagaccgcgaacgagttcctcgccgcaagctggcatgtggccgcatcgggccacggc
gccggcgcgccgatcagcttcgaccgggcgagcttcctcgacttcgacgagacgatcagc
gcgctcgaatacgccaaccacgacatctaccgactgacgagcttcggcgtcgacgcgagc
ctgcccggccacgtcagcctcgcagcggccaaccctggcgcataccgcggcgacgaggcg
aaggccgcgagcggcatcgaggggctcatcggcgaggggatcgacgtcaccgtcaccgcc
gccgcggccggcacgctcgcgcggctcaagcgcgcgatcaacgagaccggcatcgccagc
ttcgcggtgatccgctcgcaggccatcgacggcttcgtcgacacggcggccaaggtcgcg
ctgctcaccgaacgcgacctgaccggccgcacctccgccgccggccaggcgaaaacgccg
aagcgccgccgcaaggccatcgacctgatggagctgaagaccggcgactacgtggtgcac
gagcagcacggcatcggccggttcgtcggcatgcgccagcgcaccatcggtaccggcgcc
aaccggacgacgcgcgaatacctggtcatcgaatacgcgccgagcaaacgcggcgcaccg
gccgacaagctgttcatcccgaccgaccagctcgaccagatcagcaagtacatcggcgcg
gaggccccgaagctcaacaagctcggcggctccgactgggcggctaccaaggcgaaggcc
cgcaagcacgtccacgagatcgccgaggacctggtcaagctgtattcggcccgccagcgc
acccccggcttcgcgttcagccccgacaccccgtggcagaaggagctggaggacgcgttc
ccgtaccaggagaccgccgaccagctcaccaccatcgacgaggtcaaggccgacatggaa
aagccggtcccgatggaccgcctgatctgcggcgatgtcggcttcggcaagaccgagatc
gccgtgcgcgccgccttcaaggccatccaggacggcaagcaggtcgccgtgctcgtgccg
acgacgctgctcgtccagcagcactacgagaccttcgccgagcgttacgagggatttccg
gtcacgatcgccgccatgagccggttccagaccgccaaggagatcaacgagaccatcgag
gggctggagagcggcggcgtcgacatcgtcatcagcacgcacaagctgctgaacccgaag
atcaagttcaaggatctcggtctggtcatcatcgacgaggagcagcgcttcggcgtcgag
cacaaggagacgctcaaggccctgcgcaccaacgtcgacgtgctgtcgctgtcggccacg
cccatccctcgcacgctggagatggcggtgaccggcatccgcgagatgtccacgctggcc
acgccgccggaggaccgccttcccgtgctcacctatgtcggcgcctacgaggacgcgcag
gtcacggccgcggtgcgccgcgagctgctgcgcgggggacaggtgttctacgtgcacaac
cgcgtgcaggacatcgcgaagacggcggcgcggatccacgagctcgtgcccgaggcgcgc
gtcggcatcgcgcacggcaagatgggggagaagcagctcgaccagatcatccgcgacttc
tggcaccgcgacatcgacgtgctcgtgtgcacgacgatcatcgagaccggtctggatatc
tccaacgcgaacacgctgatcgtcgaccgcgccgaccgcttcggcctctcgcagctgcac
cagctgcgcggccgcgtcggccgcggccgcgagcgcgcgtacgcgtacttcctgtacgac
ccatccaagccgctgacccagcagtcgcacgaccgcctggcgacgatcgcgcagaacacg
gcgctcggttccggattcgacgtggcgatgaaggacctggagctgcgcggcaccggcaac
ctgctcggcgacgagcagtccgggcacatcgagggcgtcggcttcgacctgtacatccgc
atggtgtccgaggcggtcgagcagtacaaggagcccgaacgcaccgagccgttggccgtg
tcgatcgacctgccgatcgaggcgtcgatcccggtggactacatcgactccgacaagctg
cggctcgaggcgtaccgcaagctggcggcggcgcgcaccgagcaggatctcaaggacctg
gccgaggagctgaccgaccgctacggcaagctgcccgaggagttcgagacgctgttcggc
gtggcccgcctgcgcgccaaggcgcgcaagctcggcatctccgagatcatcgcgcagggc
cgcaacgtgcgcatcgccaaggtcgacccgcccgaatcgatccagatgcgcatcaaccgc
atctacaagggcgcgcagtaccgcccggtcacccacacctacctgatcccgacccccttc
gccggctcgctcggcgccggccccatgcccggcgagcaggtcatggactggaccagcgac
ctcctcaacgactttgcatggacgccatcgttaaacaaacggcagagccgtttgtag
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