KEGG   Bradyrhizobium sediminis: KMZ68_06400
Entry
KMZ68_06400       CDS       T08500                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bsei  Bradyrhizobium sediminis
Pathway
bsei03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bsei00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    KMZ68_06400 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsei03400]
    KMZ68_06400 (ligD)
Enzymes [BR:bsei01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     KMZ68_06400 (ligD)
DNA repair and recombination proteins [BR:bsei03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     KMZ68_06400 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M
Other DBs
NCBI-ProteinID: QWG19472
UniProt: A0A975NQG1
LinkDB
Position
1330535..1333207
AA seq 890 aa
MSRRETERSVPPKSLSTYRKKRDFERTAEPSGEVEVAASKQRRFVIQKHAATRLHYDLRL
EFDGVFKSWAVARGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGFW
ESDDPEKGFKKGDLKFTLHGGKLGGSWVLVRMRHDRDGGTRTNWLLIKHRDAFAKEGEAN
QILDEDRSIASGRTMAEIAAGKGRAPKPFMLAKAGRGKADAVWDSNEGSAAEARAERKGA
SPKALAMTKGKKVAAMPDFVAPQLCTLVERPPDSQGWCHEIKFDGYRVQMRVERGKAALK
TRKGLDWTDKFKAIAREGSALPDVLVDGEIVALDHNGVPDFSTLQAAISDGKTDNLIFFA
FDLLFAGGEDLRSVPLGQRKQRLKDLLEARKGRSNLIRYVEHFETGGDAILQSARKLALE
GIVSKRLSAPYRSGRSESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLAFVGI
VGTGFGQDTMRRIMPALKAASSDENPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTADGN
IRQAAFKGLRQDKPAEEIEAETPAMVDIASPSGKAAGNPGKVRSAPAGRSAEVMGVIISK
PDKELWPDAGDGKGVTKLDLARYFEAVGGWMIGHLKGRPCSVVRAPDGIKGEKFFQRHAM
PGTSHLLELVKVSGDRKPYLQIDRVEGLAAVAQLGGVELHPWNCAPDMPDVPGRLVFDLD
PAPEVEFSDVIEAARDMRQHLAALGLESFCKTTGGKGLHVVTPLACGAKDQVTWKEAKAF
ALGVCRWMANEDPGRYLLNMSKKLRSGKIFLDYLRNDRLATAVAVLSPRAREGATVSMPL
TWAQLRGDLDPKRYTVRTVQALLARTKAWEGYDDAASSIRAAMKKLAEKI
NT seq 2673 nt   +upstreamnt  +downstreamnt
atgtcccggcgcgaaacggaacgatccgtgccccccaagagcctgtccacctatcggaag
aagcgcgacttcgaaagaaccgctgagccttccggcgaggtcgaggtcgcggcttcgaag
cagcgccggttcgtgatccagaagcacgcggcgacccggctgcattacgacctccggctc
gaatttgacggcgtgttcaagtcctgggcggtggcgcgcgggccctcgctcgatccgcac
gacaagcggctggcggtcgaggtggaggatcatccgctcgactacggcgatttcgaaggc
accatcccgaaggggcagtatggcggcggcaccgtgcagctctgggaccgcggcttctgg
gaatccgacgatccggaaaagggattcaagaagggcgacctcaaattcaccctgcacggc
ggcaagctcggcggcagctgggtgctggtgcgcatgcgtcacgaccgcgacggcggcacc
cgcaccaactggctgctgatcaagcatcgcgacgcgttcgccaaagagggcgaggccaac
cagatcctggatgaggacaggtcgatcgcgtcgggacggacgatggcggagatcgcggcc
ggcaagggcagggcgccgaaaccgttcatgctggcgaaggccggccgcggcaaggccgac
gcggtctgggattcgaatgagggaagtgcggcagaggcgcgcgcggagaggaaaggcgca
tcgccgaaggcgctcgcgatgaccaagggcaagaaagtcgccgcgatgccggatttcgtc
gcgccgcagctctgcaccctggtcgagcgaccgccggactcgcagggctggtgccacgaa
atcaagttcgacggctaccgggtgcagatgcgcgtcgagcgcggcaaggccgcgctgaag
acccgcaaggggctggactggaccgacaagttcaaggcgatcgccagggaaggcagcgcg
ctgcccgacgtgctggtcgacggcgagatcgtcgcgctcgaccacaacggcgtcccggat
ttctccacgctgcaggccgcgatctccgacggcaagaccgacaacctgatcttcttcgcg
ttcgacctgctgtttgccggcggcgaggaccttcgcagcgtgccgctcggccagcggaaa
cagcggttgaaggacttgctggaggcccgcaagggcaggagcaacctgatccgctatgtc
gagcatttcgagaccggcggcgacgccatcctgcaatcggcgcgcaagctggcgctggag
ggcatcgtctcgaagaggctgagcgcgccctaccgttccgggcgttccgagagctggacc
aaggcaaagtgccgggccgggcatgaggtcgtgatcggcggctggaagaccaccaacggc
aaattccgctcgctgatggcgggcgtccatcgcggcgaccatctcgcctttgtcggcatc
gtcggcaccggcttcggtcaggacacgatgcggcggatcatgccggcgctgaaggcggca
agttccgacgagaacccgttcggcggcaaggatgcgccgaagaagacccgcgacgtgcac
tggctgaagcccgagctggtcgccgagatcgaattcgccggctggaccgcggacggcaac
atacgacaggctgcgttcaagggactgcgccaggacaagccggccgaggagatcgaggcg
gagacgcctgccatggtggacatcgccagcccctccggcaaagccgcaggcaatcccggc
aaggtgcggtccgcgccggcgggcaggtccgccgaggtgatgggcgtgatcatctcgaag
cccgacaaggagctgtggccggacgccggcgacggcaagggcgtgaccaagctcgatctc
gccagatatttcgaggcggtcggcggctggatgatcggccatctcaaggggcggccatgc
tcggtggtccgcgcccccgacggcatcaagggggaaaaattcttccagcgccacgcgatg
cccggcacctcgcaccttttggagctggtcaaggtctccggcgaccgcaagccctatctg
cagatcgaccgcgtcgagggcctcgccgcggtggcgcagctcggcggcgtcgaactgcat
ccctggaactgcgcgcccgatatgcccgacgtgcccggccggctggtgttcgatctcgac
cccgctccggaagtcgaattctccgacgtcatcgaagccgccagggacatgcggcagcat
ctcgccgctctcgggctggaaagcttctgcaagaccaccggcggcaaggggctgcatgtg
gtgacgccgctggcctgtggcgccaaggaccaggtgacctggaaggaagccaaggctttt
gcgcttggcgtctgccggtggatggcgaacgaagatcccgggcgctatctgctcaacatg
tcgaagaagctacgcagcggaaagatctttctcgattatctccgcaacgaccgcctggcg
accgcggtcgcggtgctgtcgccgcgggcgcgcgaaggcgccaccgtctcgatgccgctg
acatgggcccagctgcgcggcgatctcgatccgaagcgctatacggtgcgcaccgtgcag
gcgctgctggcgcggacaaaggcgtgggagggttacgatgacgcggcgtcgtcgatcagg
gccgcgatgaagaagttggcggagaagatctaa

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