Bradyrhizobium sediminis: KMZ68_06400
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Entry
KMZ68_06400 CDS
T08500
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsei
Bradyrhizobium sediminis
Pathway
bsei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KMZ68_06400 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsei03400
]
KMZ68_06400 (ligD)
Enzymes [BR:
bsei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KMZ68_06400 (ligD)
DNA repair and recombination proteins [BR:
bsei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KMZ68_06400 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
QWG19472
UniProt:
A0A975NQG1
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All DBs
Position
1330535..1333207
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AA seq
890 aa
AA seq
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MSRRETERSVPPKSLSTYRKKRDFERTAEPSGEVEVAASKQRRFVIQKHAATRLHYDLRL
EFDGVFKSWAVARGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGFW
ESDDPEKGFKKGDLKFTLHGGKLGGSWVLVRMRHDRDGGTRTNWLLIKHRDAFAKEGEAN
QILDEDRSIASGRTMAEIAAGKGRAPKPFMLAKAGRGKADAVWDSNEGSAAEARAERKGA
SPKALAMTKGKKVAAMPDFVAPQLCTLVERPPDSQGWCHEIKFDGYRVQMRVERGKAALK
TRKGLDWTDKFKAIAREGSALPDVLVDGEIVALDHNGVPDFSTLQAAISDGKTDNLIFFA
FDLLFAGGEDLRSVPLGQRKQRLKDLLEARKGRSNLIRYVEHFETGGDAILQSARKLALE
GIVSKRLSAPYRSGRSESWTKAKCRAGHEVVIGGWKTTNGKFRSLMAGVHRGDHLAFVGI
VGTGFGQDTMRRIMPALKAASSDENPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTADGN
IRQAAFKGLRQDKPAEEIEAETPAMVDIASPSGKAAGNPGKVRSAPAGRSAEVMGVIISK
PDKELWPDAGDGKGVTKLDLARYFEAVGGWMIGHLKGRPCSVVRAPDGIKGEKFFQRHAM
PGTSHLLELVKVSGDRKPYLQIDRVEGLAAVAQLGGVELHPWNCAPDMPDVPGRLVFDLD
PAPEVEFSDVIEAARDMRQHLAALGLESFCKTTGGKGLHVVTPLACGAKDQVTWKEAKAF
ALGVCRWMANEDPGRYLLNMSKKLRSGKIFLDYLRNDRLATAVAVLSPRAREGATVSMPL
TWAQLRGDLDPKRYTVRTVQALLARTKAWEGYDDAASSIRAAMKKLAEKI
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcgcgaaacggaacgatccgtgccccccaagagcctgtccacctatcggaag
aagcgcgacttcgaaagaaccgctgagccttccggcgaggtcgaggtcgcggcttcgaag
cagcgccggttcgtgatccagaagcacgcggcgacccggctgcattacgacctccggctc
gaatttgacggcgtgttcaagtcctgggcggtggcgcgcgggccctcgctcgatccgcac
gacaagcggctggcggtcgaggtggaggatcatccgctcgactacggcgatttcgaaggc
accatcccgaaggggcagtatggcggcggcaccgtgcagctctgggaccgcggcttctgg
gaatccgacgatccggaaaagggattcaagaagggcgacctcaaattcaccctgcacggc
ggcaagctcggcggcagctgggtgctggtgcgcatgcgtcacgaccgcgacggcggcacc
cgcaccaactggctgctgatcaagcatcgcgacgcgttcgccaaagagggcgaggccaac
cagatcctggatgaggacaggtcgatcgcgtcgggacggacgatggcggagatcgcggcc
ggcaagggcagggcgccgaaaccgttcatgctggcgaaggccggccgcggcaaggccgac
gcggtctgggattcgaatgagggaagtgcggcagaggcgcgcgcggagaggaaaggcgca
tcgccgaaggcgctcgcgatgaccaagggcaagaaagtcgccgcgatgccggatttcgtc
gcgccgcagctctgcaccctggtcgagcgaccgccggactcgcagggctggtgccacgaa
atcaagttcgacggctaccgggtgcagatgcgcgtcgagcgcggcaaggccgcgctgaag
acccgcaaggggctggactggaccgacaagttcaaggcgatcgccagggaaggcagcgcg
ctgcccgacgtgctggtcgacggcgagatcgtcgcgctcgaccacaacggcgtcccggat
ttctccacgctgcaggccgcgatctccgacggcaagaccgacaacctgatcttcttcgcg
ttcgacctgctgtttgccggcggcgaggaccttcgcagcgtgccgctcggccagcggaaa
cagcggttgaaggacttgctggaggcccgcaagggcaggagcaacctgatccgctatgtc
gagcatttcgagaccggcggcgacgccatcctgcaatcggcgcgcaagctggcgctggag
ggcatcgtctcgaagaggctgagcgcgccctaccgttccgggcgttccgagagctggacc
aaggcaaagtgccgggccgggcatgaggtcgtgatcggcggctggaagaccaccaacggc
aaattccgctcgctgatggcgggcgtccatcgcggcgaccatctcgcctttgtcggcatc
gtcggcaccggcttcggtcaggacacgatgcggcggatcatgccggcgctgaaggcggca
agttccgacgagaacccgttcggcggcaaggatgcgccgaagaagacccgcgacgtgcac
tggctgaagcccgagctggtcgccgagatcgaattcgccggctggaccgcggacggcaac
atacgacaggctgcgttcaagggactgcgccaggacaagccggccgaggagatcgaggcg
gagacgcctgccatggtggacatcgccagcccctccggcaaagccgcaggcaatcccggc
aaggtgcggtccgcgccggcgggcaggtccgccgaggtgatgggcgtgatcatctcgaag
cccgacaaggagctgtggccggacgccggcgacggcaagggcgtgaccaagctcgatctc
gccagatatttcgaggcggtcggcggctggatgatcggccatctcaaggggcggccatgc
tcggtggtccgcgcccccgacggcatcaagggggaaaaattcttccagcgccacgcgatg
cccggcacctcgcaccttttggagctggtcaaggtctccggcgaccgcaagccctatctg
cagatcgaccgcgtcgagggcctcgccgcggtggcgcagctcggcggcgtcgaactgcat
ccctggaactgcgcgcccgatatgcccgacgtgcccggccggctggtgttcgatctcgac
cccgctccggaagtcgaattctccgacgtcatcgaagccgccagggacatgcggcagcat
ctcgccgctctcgggctggaaagcttctgcaagaccaccggcggcaaggggctgcatgtg
gtgacgccgctggcctgtggcgccaaggaccaggtgacctggaaggaagccaaggctttt
gcgcttggcgtctgccggtggatggcgaacgaagatcccgggcgctatctgctcaacatg
tcgaagaagctacgcagcggaaagatctttctcgattatctccgcaacgaccgcctggcg
accgcggtcgcggtgctgtcgccgcgggcgcgcgaaggcgccaccgtctcgatgccgctg
acatgggcccagctgcgcggcgatctcgatccgaagcgctatacggtgcgcaccgtgcag
gcgctgctggcgcggacaaaggcgtgggagggttacgatgacgcggcgtcgtcgatcagg
gccgcgatgaagaagttggcggagaagatctaa
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