Burkholderia seminalis: WJ12_09760
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Entry
WJ12_09760 CDS
T04851
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bsem
Burkholderia seminalis
Pathway
bsem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WJ12_09760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsem03400
]
WJ12_09760
Enzymes [BR:
bsem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WJ12_09760
DNA repair and recombination proteins [BR:
bsem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WJ12_09760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOJ25099
LinkDB
All DBs
Position
1:2163510..2166980
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASNPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLSHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLASLRTFVETSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ASDERFALGVAPLANGFAVPGEGYAVVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHSQHGIGRYLGLVSMDLGEGETEFLHLEYSGESKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFTLDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVLGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTTKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEALVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQSLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALGPKQGAAAAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccaacccgtcagcctcccccgttgcccgcgtcaagcccggccag
cgcttcgccttcgacggcgcgcacggctccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgtcaggacgtgccgctcctcgcggtgatctgcgcgaatgcggtcgacgcg
cagcggctgtcgcaggaaatccgctatttctcgcccgacgcgcgcgtgcgcctgctcccg
gactgggaaacgctgccgtacgacaccttttcgccgcaccaggacctcgtgtccgagcgg
ctcgcgacgctgcacgacctcggcgagggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcacagttgacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgaccccgacacgcagcgcagcctctacccggtgcgcgacgtgcgcctg
ctgcccggccgcgagtttccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtactacctgccgctgttcttcgacgaaaccgccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgatctcgaggcgtcgatc
cgccgcttcaccgcggacacgaagcagcgccatgcgttcctctcgcacgatcgcgagcgg
ccgatcctcgagccgcagcggctgttcctgtccgacgaggatttcttcgcgttcgcgaaa
ccgttcgcgcgcgtcgtgctgcccgcgcagccggccggcggctgggcaaccgcgctgccc
gagctgaccgtcgaccgccatgcggacgacccgctcgcgtcgctgcgcaccttcgtcgaa
acgtccggcaagcgcgtgctgctgaccgtcgaatcagccggccgccgcgagacgatcctg
caactgctcgccgagcatcacctgcgccccgcgtcgaacgaccacttcgcgggctggctc
gcgagcgacgaacgtttcgcgctcggcgtcgcgccgctcgcgaacggcttcgcggtgcca
ggcgaaggctacgcggtcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaagaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtgggcgatccggtcgtgcactcgcagcacggcatcggccgctacctgggcctc
gtctcgatggatctcggcgaaggcgagaccgaattcctgcatctcgaatactcgggcgaa
agcaagctctacgtgcccgtcgcgcaattgcacgtgatctcgcgctacagcggcgccgac
cccgacagcgcgccgttgcacgcgctcggctccggccagtgggaacgcgcgaagcgcaag
gccgcgcagcagatccgcgatacggccgccgagctgctgaatctgtacgcgcgtcgcgcg
gcccgcgaaggccacgcgttcacgctcgacccgcgcgactacgtgaaattcgcggaaagc
ttcggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgctgggcggcaagcaggtcgcgctgctgtcg
ccaaccacgctgctcgccgagcagcacacacagaccttcgccgaccgcttcgcggactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagaccacgaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggaacaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtcatc
gcgaccgcgccgcaaaagcggctcgcgatcaagaccttcgtgcgccgcgaggaggaaagc
gtgatccgcgaggcaatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaagtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggcg
cggatcgtgatcgcgcacggccagatgcacgagcgcgagctcgaacgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagctg
caccagctgcgcggccgcgtcggccgctcgcatcaccaggcctatgcgtacctgctggtc
cacgatccgcagtcgctgaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggctcgggtttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgacggaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaggagttgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcgctcgtcgagacgcatcggctgcggatcgccgcgaagccgctcggcatcgtg
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcaccggcacatcaagctcgcgggccaggac
aagttgcgcatcgagacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgctgcgcgcgctcggcccgaaacagggcgcggccgccgcggcgcgctga
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integrated database retrieval system
