Burkholderia seminalis: WJ12_16950
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Entry
WJ12_16950 CDS
T04851
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsem
Burkholderia seminalis
Pathway
bsem03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WJ12_16950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsem03400
]
WJ12_16950
Enzymes [BR:
bsem01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WJ12_16950
DNA repair and recombination proteins [BR:
bsem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WJ12_16950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOJ26624
LinkDB
All DBs
Position
3:complement(245447..248242)
Genome browser
AA seq
931 aa
AA seq
DB search
MAGKLDPYRRKRRFDASPEPEGAHGRRRVSADATTRTGRKARPAARAARPLRFVIQEHHA
RRLHYDFRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGS
VVVWDAGTWTPDGGVAQARAGYRDGKLTFRLDGAKLHGGWALVRSGRQQGRQAQWLLIKE
RDDDARDAETFDVVAQRPGSVHDGHTRAARDPAPADAAPSVRASRRARRNASDTRGAAHD
AGLERPPTDLSQVDGAVRAALPERVAPQLATLVDAPPTHGDWRYEVKFDGYRILARIAGR
GARRHVTLMTREGRDWTAKLRLQRDALAALDVDNAWLDGEAVVLRDTGLPDFQALQNALG
AGRSDAVTLFVFDLPFLDGYDLRDAPLAARRRLLEPLLAGSDPARLRYSPDLGDDIASLI
ASACDTGLEGLIGKRADARYRGGRSPAWIKLKCRRRQEFVIGGYTEPSGSRHGFGALLLG
VHEPAAGGRRPRGTPPLRYVGRVGTGFDTRLLDRLAATLRKHERATTPFDPPPRERSRTR
VYWVEPTLVAECEFAEWTGDGIVRQAAFVALREDKPARQIVREVPRHTDTETTMDGPRTT
HDRHPPAAPADTAHGRPPRTRSDASAGRMQDESGVARVGRVRITHPDRVLDPQSGTRKID
LAHYWQRVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLDPGHGP
LLSIDSVDALLGAAQMGTIELHTWNAHASNIERPDRIVFDLDPDPALPWREMIDAAQLVR
GLLDALGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKAFSRAVAQHVAGTLPERFTATMGP
RHRRGKIFVDYLRNGRGASTIAAYSVRARPGMGVSVPLDWDEVPATTGGAQWTIDTLHER
LDTLKRDPWEDYAKTRQRVTAAMRARLGVQT
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcaagctcgatccgtatcgccgcaaacgccgcttcgacgcgagcccggaaccc
gagggcgcgcacgggcggcggcgcgtttccgccgatgcgactacgcgcacggggcgcaag
gcacgaccggccgcacgcgcggccaggccgctgcgcttcgtgatccaggaacaccacgca
cggcgcctgcattacgacttccgtctcgagctcgacggcacgctgaagtcgtgggccgtg
ccgaaggggccgagcgtcgacccgtcggtgaaacggctggccgtgcacgtcgaggatcat
ccgctcgaatatgcgtcgttcgaaggcgagattccggccggccattacggcgcgggttcg
gtcgtcgtctgggacgcgggcacgtggacgcccgacggcggcgtcgcacaggcacgcgcc
ggctatcgtgacggcaagctgacgttccggctcgacggcgcgaagctgcacggcggctgg
gcgctcgtgcgcagcgggcggcagcagggccgccaggcgcaatggctgttgatcaaggaa
cgcgacgacgacgcgcgcgacgccgagacgttcgatgtcgttgcccagcggccgggcagc
gtgcatgacggacacacgcgggccgcgcgcgatccggcaccggccgacgcggcgccttcc
gtgcgtgcatcgcgccgcgcccggcgcaacgcgtcggacacgcgcggcgcggcgcacgac
gccgggctggaaaggccgcccaccgacctgtcgcaggtagacggcgccgtgcgtgcggcg
ttgcccgagcgcgtcgcgccgcaactcgcgacgctggtcgatgcgccgccgacgcacggc
gactggcgctacgaggtgaaattcgacggctaccggatccttgcgcggatcgcgggccgc
ggcgcacggcggcacgtcacgctgatgacgcgcgaaggccgcgactggaccgcgaagctg
cgcttgcagcgcgatgcgctcgcggcgctcgacgtcgacaacgcgtggctcgacggcgag
gccgtcgtgctccgcgacaccggcctgccggatttccaggcgctgcagaacgcgctcggc
gccgggcgctcggacgcggtgacgctgttcgtgttcgacctgccgtttctggacggatac
gacctgcgcgacgcgccgctcgccgcgcgtcgcaggctgctcgaaccgctgctcgccggc
agcgaccccgcgcggctgcgctactcgcccgatctcggcgacgatatcgcgtcgctgatc
gcgagcgcgtgcgacacggggctcgaggggctgatcggcaagcgcgcggatgcgcgctat
cgcggcggccgctcgcccgcgtggatcaagctgaaatgcaggcggcggcaggagttcgtg
atcggcggttataccgagccgtcgggcagccggcatggcttcggcgcgctgctgctcggc
gtccacgagcccgccgcgggcggcaggcggccgcgcggcacgccgccgctgcgttatgtc
ggccgtgtcggtaccgggttcgatacgcgcctgctcgaccggctcgcggccaccttgcgc
aagcacgaacgcgccacgacgccgttcgacccgccgccgcgcgaacggtcgcgcacgcgg
gtctactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggaccggcgac
gggatcgtgcggcaggcggcgttcgttgcgctgcgcgaagacaagccggcgcggcagatc
gtccgcgaggtgccgcgccacaccgacacggagacgacgatggatggaccccgcaccacg
cacgaccggcacccgcccgccgcgcctgccgacaccgcgcacggccgcccgccgcgtacg
cgctccgatgcgtcggccggccgcatgcaagacgaatccggtgtcgcccgggtcggccgg
gttcgcatcactcaccccgatcgcgtactcgatccgcaaagcggcacgcgcaagatcgac
ctcgcgcattactggcagcgggtcgcgccgtggctgctgcccgacctgaaaggacgaccg
gtatcgctcgtgcgcgcgccgggcgacatcgccggcgaactgttcttccagaagcatgcg
gagcgacgcgagatcccgttcgtcacgcagcatgaaggactcgatcccggccacgggccg
ctgctgtcgatcgacagcgtcgacgcgctgctcggcgccgcgcagatgggcacgatcgag
ttgcatacgtggaacgcgcatgcgtcgaacatcgagcggccggaccgcatcgtgttcgac
ctcgatcccgatccggcattgccgtggcgcgagatgatcgacgccgcgcagctcgtgcgc
gggctgctcgatgcgctgggactcgtgtccttctgcaagaccagcggcggcaaggggctg
cacgtcgtcgtgccgctcacgcggcacgcgggctgggacgacgtgaaggcgttctcgcgc
gccgtcgcgcagcacgtcgccggcacgttgcccgagcgcttcaccgcgacgatggggccg
cgccaccggcgcggcaagatcttcgtcgactacttgcgcaacggccgcggcgcgagcacg
atcgccgcgtactcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgctcgactgg
gacgaggtgcccgcgacgacgggcggcgcgcaatggacgatcgacacgctgcacgaacgg
ctcgatacgctgaagcgcgatccgtgggaagactatgcgaagacgcgccagcgcgtcacc
gccgcgatgcgtgcgcggctcggcgtgcaaacgtga
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