Bradyrhizobium septentrionale: HAP48_0003790
Help
Entry
HAP48_0003790 CDS
T07866
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsep
Bradyrhizobium septentrionale
Pathway
bsep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HAP48_0003790 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsep03400
]
HAP48_0003790 (ligD)
Enzymes [BR:
bsep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HAP48_0003790 (ligD)
DNA repair and recombination proteins [BR:
bsep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HAP48_0003790 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGY16683
LinkDB
All DBs
Position
complement(396793..399426)
Genome browser
AA seq
877 aa
AA seq
DB search
MSLRNLTTYRKKRDFEKTNEPSGDVKVASATQRRFVIQKHDATRLHYDFRLEFDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF
RKGDLKFTLHGDKLHGSWVLVRMKNDRFGGKRTNWLLIKHRDEYAVDGNGEAILDEDRSV
ASGRSMAEIAAGKGRAPKPFMLAKGNGKAKADAVWQSNRGMAADARAKTKAPAPKAKLEA
QSKAHPKQVAEMPDFVPPQLCAAVESPPNGTGWCHEIKFDGYRVQLRVEDGEVDLKTRKA
LDWTDKFGAIAKEAGKLPDVLIDGEIVALDEGGMPHFSTLQAALSDGKTDRLIFYAFDLL
FAGNEDLRPLPLTERKARLKELLAARKGKNPLIRYVEHFEERGEAVLDSARKLGLEGIVS
KRLDGAYRSGRSDDWTKAKIRAGHEVVIGGWKTTNGKFRSLMAGVYRGDHLAFVGIVGTG
FGQDTVRRIMPALKAAASDTSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIRQA
AFKGLRQDKPAHEVEAERPVVTTVVKPMAKGRSSGKSSGEVMGVTISHPDKALWPDAGDG
EPVTKLDLASYFEAVGTWMIGYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKLAKV
SGDRKPYIQIDQIEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFSDVID
AAKDMRQRLTAVGLESFCKTTGGKGLHVVTPLLAGARDKVTWKEAKAFAQGICQWMAQDD
PERYLINMSKAKRTGKIFLDYLRNDRLSTAVAVLSPRARPGATVSMPLTWPQLRGDLDPK
KYTVRTVPALLAKTKAWDGYEDAASSIKAAMKKLAAQ
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgagaaacctcaccacctatcgcaagaaacgcgacttcgagaagaccaatgag
ccgtcgggcgacgtcaaggtagcgtccgcgacgcaacgtcgcttcgtgatccagaagcat
gacgcgacgcggctgcattatgattttcggcttgagttcgacggcgtattcaagtcctgg
gcggtgacgcgcgggccctcgctcgatccgcatgacaagcgactcgcggtcgaggtggag
gatcatccgctcgactacggcgatttcgaaggcacgattccggaaggccagtacggcggc
ggcacggtgcagctctgggaccgcggcacctgggaatctgacgatcccgagcgcggcttc
aggaagggcgacctgaagttcacgctgcacggcgacaagctgcacggcagctgggtgctg
gtgcggatgaagaacgaccgctttggcggcaagcgcaccaactggctcctgatcaagcac
cgcgacgaatatgccgttgacggcaacggcgaggcgatcctcgacgaggaccgctcggtc
gcctccggccgctcgatggcagagatcgccgccggcaagggccgcgcgccgaagcccttc
atgctggccaagggcaacggcaaggccaaagcggacgcggtctggcagtccaatcgcggc
atggccgcggacgcgcgcgcgaagaccaaggcgccggcgcccaaggcgaaattggaggca
caatcaaaggcgcacccgaagcaggtggcggagatgccggacttcgttccgccgcaactc
tgcgccgcggtcgagagcccgcctaacggcacgggctggtgccacgagatcaagttcgac
ggctaccgcgtgcagctccgcgtcgaggacggggaggttgacctgaagacccgcaaggcg
ctcgactggaccgacaagttcggcgcgatcgccaaggaagccggcaagctgccggacgtc
ctgatcgacggcgagatcgttgcgctcgacgagggcggcatgccgcatttctcgacgctg
caggccgcactctccgacggcaagactgaccggctgatcttctacgccttcgacctgctg
tttgcgggcaatgaggatctccgcccgctgccgctcaccgagcgcaaggcgcggctgaag
gaattgctcgcggcgcgcaagggcaagaaccccttgatccgctatgtcgagcatttcgag
gagcgcggcgaggccgtgctggattccgcgcgcaagctcgggctggaaggcatcgtctcg
aagcggctcgacggcgcctaccgctccggccggtccgacgactggaccaaggcaaaaatc
cgcgccggccatgaggtggtgatcggcggctggaagaccaccaacggcaaattccgctcg
ctgatggccggcgtctatcgcggcgatcatctggcctttgtcggcatcgtcggcaccggc
ttcggccaggacacggtccgccgcatcatgccggcgctgaaggccgcggcatccgacacg
agcccgttcggcggcaaggacgcgccgaagaaaacccgcgacgtgcactggctgaagccg
gaactggtcgccgagatcgagttcgccggctggaccgatgccggcaacatccgccaggcg
gcattcaagggcctgcgccaggacaagccggcgcatgaggtcgaggccgagcggccggtc
gtaaccacagtggtgaagccgatggccaaaggaagatcatccgggaaatcgtccggcgag
gtgatgggcgtcacgatctcccatccggacaaggcgttgtggcctgacgccggcgacggc
gagccggtgaccaagctcgatctcgccagctatttcgaggcggtcggcacatggatgatc
ggctacctcaagggccggccatgctcgatcgtgcgcgcccctgatggcatcaagggtgag
actttcttccagcgtcacgcgatggccggcacgtcaaaactcctgaagctcgccaaggtg
tccggcgaccgcaaaccctatattcagatcgaccagatcgagggcctggcggcggtcgcg
cagctcggcggcctcgaactgcatccctggaattgcgcgccggatgcctatgacacaccg
ggccgcctggtgttcgatctcgatcccgcgcccgacgtcgcgttcagcgacgtcatcgat
gccgccaaggacatgcgccagcggctcacggccgtgggcctcgaaagcttctgcaagacc
accggcggcaaaggccttcacgtcgtgacaccgctgctcgcaggcgccagggacaaggtg
acgtggaaggaagccaaggcattcgcgcaaggcatctgccagtggatggcgcaggacgac
cccgagcgctatctgatcaacatgtcgaaggccaagcgcaccggaaagatcttcctcgac
tatctgcgcaacgatcggctctcgaccgcggtcgcggtgttgtcgccgcgggcgcgtccg
ggcgcgacggtgtcgatgccgctgacctggccgcaactgcgcggcgatctcgatccgaag
aagtatacggtgcggacagtgccggcgctgctggcgaagaccaaggcgtgggacggctac
gaggatgcggcatcgtcgatcaaggcggcgatgaagaagctcgcggcacagtag
DBGET
integrated database retrieval system