Bacillus shivajii: LGQ02_15425
Help
Entry
LGQ02_15425 CDS
T07881
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bshi
Bacillus shivajii
Pathway
bshi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bshi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LGQ02_15425 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bshi03400
]
LGQ02_15425 (ligD)
Enzymes [BR:
bshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LGQ02_15425 (ligD)
DNA repair and recombination proteins [BR:
bshi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LGQ02_15425 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UCZ52225
LinkDB
All DBs
Position
3173656..3174909
Genome browser
AA seq
417 aa
AA seq
DB search
MTINHPVFSDKKRTYKGSFFLTGFHRTKRQFFAGFFKNGEIIEAGSFSEGLTEEEKSALI
NSLMKQVPRKTKKQKIAIKPSLCVELTFSGFSRNKLLHPKFSKFQLKDHPESCTWSNLII
KNLSISDSVQVTNHDKRLWETPPINKDQYVAYLSEIAERMLPFLQERTVTVKRAPQGVKD
EVFYQKNCPEYAPPFVNTYHTDETDYIVCDNVSTLLWLGNQASIEFHIPFNTVKSENPGE
IVFDLDPPGREHFSLAIKASRLMKERLDAFNITSFPKLSGNKGLQIHIPFFNRSLTYEDT
RIFTSFMANYLTEKYSKDFTTERMKKKRGNKLYIDYVQHWRGKTIICPYSLRINEDATVA
APLNWNEVNENLNPIDYDLFSVLARVRKKQCPLKKYFKTKNESVAEVIDMLKKNGHK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcaatcaccctgttttttcagacaaaaaaagaacctataaaggcagtttcttt
ttaacaggctttcatcgcacaaagagacagttttttgctggtttctttaaaaatggtgaa
attattgaagctggatctttttctgaaggtcttacagaagaagagaaaagtgcgctgatc
aactcattaatgaaacaagtcccacgaaaaacaaaaaaacaaaaaattgcgatcaaacca
agcctctgtgtcgagttaacgttttctggcttttcgcgtaataagctacttcatcctaag
ttttctaaatttcaactaaaggatcacccagaaagctgtacgtggagcaatttaattata
aaaaacctttcaataagcgacagcgttcaagtaacaaaccatgataaacgattatgggaa
acaccgccaattaataaggatcaatacgtggcctacttatcggaaattgcagagcgaatg
ctaccatttttacaagagcgaacggtgactgtaaaacgcgctccacaaggtgtgaaggat
gaagtgttttatcaaaaaaattgtccagaatatgctccgccattcgtgaacacatatcat
acagatgagacggattacattgtttgtgacaatgtgtcaacgcttctttggctcggtaac
caagcgtcaatagagtttcacattccttttaataccgtcaaaagcgaaaaccctggtgaa
attgtctttgaccttgatccaccgggacgagagcatttttccttagccattaaagcgtcg
cgccttatgaaagaacgtcttgatgcctttaatattactagtttcccaaagctctccggc
aacaaaggtttgcaaatccatattccgttctttaatcgttcacttacttatgaggatacg
agaattttcacatcctttatggcaaactatcttactgaaaaatattctaaagactttacg
acagaacgaatgaagaaaaagcgtggcaacaaactttacattgactacgttcaacattgg
cgaggaaaaacgattatttgtccttactcattaagaataaatgaagatgctacagtcgca
gcacctcttaactggaatgaagttaacgaaaatttaaacccaatcgattatgatttattt
tcggtcttagctcgtgttcggaaaaaacaatgccctttaaaaaaatatttcaaaacaaaa
aatgaaagtgtcgccgaggtcattgacatgctaaaaaagaacggtcataaataa
DBGET
integrated database retrieval system
