Bacillus siamensis: CWD84_14665
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Entry
CWD84_14665 CDS
T06647
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsia
Bacillus siamensis
Pathway
bsia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CWD84_14665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsia03400
]
CWD84_14665 (ligD)
Enzymes [BR:
bsia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CWD84_14665 (ligD)
DNA repair and recombination proteins [BR:
bsia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CWD84_14665 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
AUJ77983
UniProt:
A0A2K9KFE6
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All DBs
Position
2920309..2922144
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AA seq
611 aa
AA seq
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MVLTMQPILTSSPPIGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITAFA
ARCFQHMKDRFPITLDGELVYLINPYRADFEHIQIRGRLKRAEAIESTANRRPCRFLAFD
LLVLEGAGTVSLPYVKRKRALFKLFEEANLPKSPHHLAEEAIQYIPEHTDFEALWDKIVR
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGAIVPI
ASVSHGMQAEEKNAVRTIMETHGKKQKSGEYILEPSICMTVQYLTILQDTLREVSFVSFQ
FEMDWTECTYEQLILQSKTLPPKLQFTSLDKTVFKKSEKKKADFLCYMVKMSDFLMPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSVPSLLWLANQLALE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWNEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
SNVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattttgacctcttcaccgcccataggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggcgtcaca
ttgaccagcagaaacggccagacgctgacgaatcaatttccggaaatcacggcttttgcg
gcacggtgttttcagcacatgaaagaccggttccccattacgcttgacggagagcttgtc
tatttaatcaatccgtacagagcggactttgaacatattcaaatccgcgggcgtttaaaa
cgggcggaagccattgaaagcaccgccaatagacggccgtgccgctttctggcatttgat
ctcttagttctggaaggtgccggcaccgtctcattgccgtatgtgaagcggaagcgcgcc
cttttcaaactgtttgaagaagcaaatcttccgaaaagcccccatcacttagcggaggaa
gcgattcagtacattccggagcacactgactttgaagcgctctgggacaagatcgtccgg
catgacggagaaggaatagtagcaaaaagagcatcaagcggctgggcggaaaataaacgg
tctcccgactggcagaagtataaacatatgaaaacggctcacgtgctattaaccgggttt
aatccgaagaacgggtacgtgacggcctcggtattaaaagacggcgccattgtcccgatc
gcttccgtttcccacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggag
actcacggcaaaaaacaaaaaagcggcgaatatatacttgagccttccatctgtatgacc
gtgcagtatttaaccatattgcaggacacgctgcgtgaagtatcttttgtttcttttcag
tttgaaatggattggactgaatgtacgtatgagcagcttatcctccagtctaaaacgctg
ccgccgaaactgcagttcacaagcctggataagaccgtttttaagaagtctgaaaaaaag
aaagcggatttcctttgttatatggtgaagatgagcgattttcttatgccttttctcaaa
gatcgggccgtcacggtgatccgttatccgcatggggcgccgggcgaatctttttttcaa
aaaaacaaaccggattacacgccggactttgtctcaagcgtatttgacggaagccacgaa
cacatcgtatgcagcagcgtaccgtctcttttatggctcgccaatcagctggcgctggaa
tttcacgttccgtttcagaccgtgcattctgaaaggcccgcagaaatcgtcattgacctt
gatcctccgtcaaggaacgattttcctatggccgtggaggcggcccatgtgctgaaacag
ctgtttgactcattcagcataacatcattcccgaagctctccgggaataaagggattcag
ctctacatcccgctttcaccggaagcattcacctatgaggagacccgcgcgttcacaatg
ctaatcgccgattattgcgtcaggacgcgtccggatctttttacgacagagcggtttatc
aaaaaccggaacggcaggctctacctagattatttgcagcatgccgaaggaaaaacgatc
atcgctccatattcgacccggggcaatgaactaggaacggttgccgcccctctttattgg
aacgaagtcaactcctctttaacacccgatgattatacgattgatacagtggtgaatcgg
gtcaggacagagggagatccgttttatgatttttaccggaatccgcaggacggcccgctt
tcaaacgtgcttgagcaaatcaagagaaagagctga
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