Bacillus smithii: BSM4216_2042
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Entry
BSM4216_2042 CDS
T03984
Name
(GenBank) Hydrolase HAD superfamily
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bsm
Bacillus smithii
Pathway
bsm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSM4216_2042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsm03019
]
BSM4216_2042
Messenger RNA biogenesis [BR:
bsm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSM4216_2042
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
AKP47294
UniProt:
A0A0H4P0H0
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All DBs
Position
1:complement(1777960..1779519)
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AA seq
519 aa
AA seq
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MTSIIIISILLGLIVGVVVGYFVRKSIAEHKIAGAKSIADQIIEDAKREAESVKKESLLE
AKDEIHKLRTEAEREIRERRNELQKQENRLLQKEENLDRKDELLDNRESMLEKKEDSLAE
RQQHIEEMESKVDEMVRTQKAELERISGLTREEARSIILERVENELSHETALMIKEHEIR
VKEEADKKAKEILSLAIQRCAAEHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARIALEKLVQDGRIHPARIEEMVEKSRREVDEYIRE
VGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLNHSKEVAYLAGLLAAELGEDETLA
RRAGLLHDIGKAVDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEPTSVISVLVA
AADALSAARPGARSETLENYIRRLEKLEEISESHEGVEKSYAIQAGREIRIMVKPEQVDD
LEAHRLARDIRKQIEEELDYPGHIKITVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgacatccattataatcatctccattttgcttggcctaatcgtcggtgtagttgttggc
tattttgttcgaaaatccattgctgagcataaaatcgcaggggcaaagagtattgcggat
caaatcattgaagacgcaaagcgcgaggcggaatcggtgaaaaaagaatccctgctggaa
gcaaaggatgaaattcataagcttcgtacagaagcggaacgagaaattcgtgaacgaaga
aacgaattgcagaaacaagaaaatcgtttattgcaaaaagaagagaaccttgaccgcaaa
gatgaactcttggataatcgggagtcgatgctggaaaagaaggaagattctctagctgaa
agacaacaacatattgaagagatggaaagcaaagtggacgagatggtgcgaacgcagaaa
gccgaactggagcgtatctcgggtctcactcgcgaagaagcccgttccattattttggaa
cgcgttgaaaatgaattgtcccacgagacggctcttatgataaaagagcatgaaattcgc
gtgaaagaagaggctgacaaaaaggcgaaagaaattctgtcgctggccattcaacggtgt
gccgctgagcatgtggctgaaacaaccgtttctgttgtcaaccttccaaacgatgaaatg
aaaggacgcattattggacgggaaggacgtaatatccggacactcgaaacactaacgggg
atagacctcatcattgatgatacaccggaagcggtaatcttgtctggttttgaccccatt
cgccgtgaaactgcgcgaatcgctcttgaaaagctggtgcaggatggaagaatccatccg
gcaagaatcgaagagatggtggaaaaatcaagacgagaagtggacgaatatattcgcgaa
gttggcgaacaaacgacttttgaagtgggggttcacggacttcaccctgatttaattaaa
attttgggacgtttaaaattccggacgagctacggccaaaacgttctgaatcattccaaa
gaggtggcctatcttgccggcctgttggcagcggaattgggtgaagatgaaactttagcc
cgccgtgcaggacttcttcatgatatcggaaaagcggtggaccatgaggtagaaggaagc
catgttgagattggagtagaacttgcaaccaagtacaaagaacatccagtagtgatcaac
agcattgcttcccaccacggagatacggaaccaacatctgtgatttccgtattggtggcg
gcggctgatgcgttatccgcggccagaccaggagctcgaagcgagacgcttgaaaactat
atccgccgtctcgaaaaattagaagagatttccgaatctcacgaaggcgtggaaaaatca
tacgccattcaagcgggacgcgaaatacgaatcatggtgaaacctgaacaagtcgatgac
ttagaagcacatcggctggcaagagacattcgcaaacagattgaggaagagttagattat
cctggtcacattaaaatcacagtcattcgtgaaacaagggctgtagaatatgcgaagtaa
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