KEGG   Baekduia soli: FSW04_15890
Entry
FSW04_15890       CDS       T06127                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bsol  Baekduia soli
Pathway
bsol03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bsol00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FSW04_15890 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsol03400]
    FSW04_15890 (ligD)
Enzymes [BR:bsol01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FSW04_15890 (ligD)
DNA repair and recombination proteins [BR:bsol03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FSW04_15890 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: QEC48910
UniProt: A0A5B8U7C7
LinkDB
Position
3345408..3347804
AA seq 798 aa
MAGRALDPYDAKRDFTATPEPKGRRTSARKGAPRFVIQEHSATRLHWDLRLEHDGALASW
AIPNGLPWAARDNRLAVHTEDHPLEYLDFHGEIPKGSYGAGTMTIWDHGTYELLKWDERK
VEVELHGERVTGRYALFAIGEGDGPSKDWMIHRMGEPAEGDWILGHEPMPDRLVPMLARP
GEIPRDDDGWAYEIKWDGVRAICFSEPGRMRFVTRNGNDVTPRYPELARMNRALSMHRAI
LDGEVVALDADGRPSFAALQGRMHLTRESQVRRLAREAPVTYVAFDLLWLDGRSLMDLPY
AERRERLAALALEGERWAAPDHVVGDGRRMLAATREQGLEGVIAKRLDSPYEPGRRTGAW
RKIKNVQRQELVIAGWLPGEGRRRERIGALLVAVREGDALRYAGRVGTGFTEAELERLAG
LLGPLERDASPLDVVPKAVKIPREAIYVEPRLVCEVEFLEWSREGVLRAPSYKGLRDDKP
AGLVVRERLRTGGAGSAVLAEIDGRELRLTNVDKPLWASGHTKGDLIRYLVELAPTLLPH
LEHRPLTLKRYPDGADAKFFYEKQAPSHRPDWVAVAPVRHAREKTITYVLAQDAATLAWL
GNLADLELHTPMHRVRETSGITGPTMIAFDLDPGEPAGLLECCRVAVVLQGMFEHLGLQA
FPKTSGSKGMQVYVPLNTPETTTYAQTKGLARAVAELLEAEAGDLVVSRQAKRLRPGRVL
VDWSQNDDNKTTVCVYSPRARERPTVSTPLAWDEVAAALDAGSADGLVFDLDGVLARVRD
QGDLFAPVLTLVQELPAL
NT seq 2397 nt   +upstreamnt  +downstreamnt
atggccggacgggccctggacccctacgacgccaagcgcgacttcaccgccacacccgag
cccaagggccggcggaccagcgcgcgcaagggcgcgccgcgcttcgtcatccaggagcac
agcgccacgcggctgcactgggacctgcggctcgaacacgacggtgcgctggcctcctgg
gcgatccccaacggcctgccgtgggcggcgcgcgacaaccgcctggccgtgcacaccgag
gaccacccgctcgagtacctcgacttccacggcgagatccccaagggcagctacggggcg
gggacgatgacgatctgggaccacggcacctacgagctgctcaagtgggacgagcgcaag
gtcgaggtcgagctgcacggcgagcgcgtcaccggccgctacgcgctgttcgccatcggc
gagggcgacgggccgtccaaggactggatgatccaccgcatgggcgagcccgccgagggc
gactggatcctcggccacgagcccatgcccgaccgcctggtgccgatgctcgcccgcccc
ggcgagatcccacgcgacgacgacggctgggcctacgagatcaagtgggacggggtccgc
gcgatctgcttcagcgagcccgggcggatgcggttcgtgacccgcaacggcaacgacgtc
accccgcgctatcccgagctggcccggatgaaccgcgcgctgagcatgcaccgcgcgatc
ctcgacggcgaggtcgtggcgctcgacgccgacgggcgcccgtcgttcgccgccctgcag
ggacggatgcacctcacgcgcgagagccaggtgcggcgcctggcccgcgaggcgcccgtc
acctacgtggccttcgacctgctctggctcgacggccgctcgctcatggacctgccctac
gccgagcggcgcgagcggctcgccgcgctcgcgctcgagggcgagcgctgggcggcgccc
gaccacgtggtgggcgacgggcgccggatgctggcggccacccgcgagcaggggctggag
ggcgtcatcgccaagcggctggactctccgtacgagccgggccggcgcaccggcgcctgg
cgcaagatcaagaacgtccagcgccaggagctggtcatcgccgggtggctgcccggggag
gggcggaggcgcgagcggatcggcgcgctactggtggccgtgcgcgagggcgacgcgctg
cgctacgccggccgcgtgggcacggggttcacggaggccgagctggagcgcctggcgggc
ctgctgggcccgctggagcgcgacgcctcgccgctggacgtcgtgcccaaggcggtgaag
atcccgcgcgaggcgatctacgtcgagccccggctggtctgcgaggtcgagttcctggag
tggtcgcgcgagggcgtcctgcgcgccccctcctacaaggggctgcgcgacgacaagccg
gcggggctcgtcgtgcgcgagcggctgcgcacgggcggcgcgggctcggcggtgctcgcc
gagatcgacggccgcgagctgcggctgaccaacgtggacaagcccctctgggcctccggg
cacacgaagggcgacctcatccgctacctcgtcgagctggccccgacgctgctgccccac
ctcgagcaccgcccgctgacgctcaagcgctatcccgacggcgccgacgccaagttcttc
tacgagaagcaggcgccgtcgcaccggcccgactgggtcgccgtcgcgcccgtccgccac
gcccgcgagaagaccatcacctacgtgctggcccaggacgcggccaccctggcctggctg
ggcaacctggccgacctcgagctgcacaccccgatgcaccgcgtgcgggagacctccggc
atcaccgggccgacgatgatcgcgttcgacctcgaccccggtgagcccgcgggcctgctg
gagtgctgccgcgtcgcggtcgtcctgcaggggatgttcgagcacctcgggctgcaggcg
ttcccgaagacgtcgggctcgaaggggatgcaggtctacgtcccgctcaacacgcccgag
accacgacctacgcccagaccaagggcctggccagggccgtcgccgagctgctggaggcc
gaggccggcgatctggtggtctcgcggcaggccaagcgcctgcgcccggggcgggtgctc
gtggactggagccagaacgacgacaacaagacgacggtgtgcgtgtactcgccacgggcc
cgggagcgcccgacggtctccacgccgctggcctgggacgaggtcgcggccgcgctggac
gccggcagcgcggacggcctggtcttcgacctcgacggcgtgctggcgcgcgtgcgcgac
cagggcgacctcttcgccccggtgctcacgctggtccaggagctgccggcgctctga

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