Baekduia soli: FSW04_15890
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Entry
FSW04_15890 CDS
T06127
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsol
Baekduia soli
Pathway
bsol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FSW04_15890 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsol03400
]
FSW04_15890 (ligD)
Enzymes [BR:
bsol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FSW04_15890 (ligD)
DNA repair and recombination proteins [BR:
bsol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FSW04_15890 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QEC48910
UniProt:
A0A5B8U7C7
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All DBs
Position
3345408..3347804
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AA seq
798 aa
AA seq
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MAGRALDPYDAKRDFTATPEPKGRRTSARKGAPRFVIQEHSATRLHWDLRLEHDGALASW
AIPNGLPWAARDNRLAVHTEDHPLEYLDFHGEIPKGSYGAGTMTIWDHGTYELLKWDERK
VEVELHGERVTGRYALFAIGEGDGPSKDWMIHRMGEPAEGDWILGHEPMPDRLVPMLARP
GEIPRDDDGWAYEIKWDGVRAICFSEPGRMRFVTRNGNDVTPRYPELARMNRALSMHRAI
LDGEVVALDADGRPSFAALQGRMHLTRESQVRRLAREAPVTYVAFDLLWLDGRSLMDLPY
AERRERLAALALEGERWAAPDHVVGDGRRMLAATREQGLEGVIAKRLDSPYEPGRRTGAW
RKIKNVQRQELVIAGWLPGEGRRRERIGALLVAVREGDALRYAGRVGTGFTEAELERLAG
LLGPLERDASPLDVVPKAVKIPREAIYVEPRLVCEVEFLEWSREGVLRAPSYKGLRDDKP
AGLVVRERLRTGGAGSAVLAEIDGRELRLTNVDKPLWASGHTKGDLIRYLVELAPTLLPH
LEHRPLTLKRYPDGADAKFFYEKQAPSHRPDWVAVAPVRHAREKTITYVLAQDAATLAWL
GNLADLELHTPMHRVRETSGITGPTMIAFDLDPGEPAGLLECCRVAVVLQGMFEHLGLQA
FPKTSGSKGMQVYVPLNTPETTTYAQTKGLARAVAELLEAEAGDLVVSRQAKRLRPGRVL
VDWSQNDDNKTTVCVYSPRARERPTVSTPLAWDEVAAALDAGSADGLVFDLDGVLARVRD
QGDLFAPVLTLVQELPAL
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggccggacgggccctggacccctacgacgccaagcgcgacttcaccgccacacccgag
cccaagggccggcggaccagcgcgcgcaagggcgcgccgcgcttcgtcatccaggagcac
agcgccacgcggctgcactgggacctgcggctcgaacacgacggtgcgctggcctcctgg
gcgatccccaacggcctgccgtgggcggcgcgcgacaaccgcctggccgtgcacaccgag
gaccacccgctcgagtacctcgacttccacggcgagatccccaagggcagctacggggcg
gggacgatgacgatctgggaccacggcacctacgagctgctcaagtgggacgagcgcaag
gtcgaggtcgagctgcacggcgagcgcgtcaccggccgctacgcgctgttcgccatcggc
gagggcgacgggccgtccaaggactggatgatccaccgcatgggcgagcccgccgagggc
gactggatcctcggccacgagcccatgcccgaccgcctggtgccgatgctcgcccgcccc
ggcgagatcccacgcgacgacgacggctgggcctacgagatcaagtgggacggggtccgc
gcgatctgcttcagcgagcccgggcggatgcggttcgtgacccgcaacggcaacgacgtc
accccgcgctatcccgagctggcccggatgaaccgcgcgctgagcatgcaccgcgcgatc
ctcgacggcgaggtcgtggcgctcgacgccgacgggcgcccgtcgttcgccgccctgcag
ggacggatgcacctcacgcgcgagagccaggtgcggcgcctggcccgcgaggcgcccgtc
acctacgtggccttcgacctgctctggctcgacggccgctcgctcatggacctgccctac
gccgagcggcgcgagcggctcgccgcgctcgcgctcgagggcgagcgctgggcggcgccc
gaccacgtggtgggcgacgggcgccggatgctggcggccacccgcgagcaggggctggag
ggcgtcatcgccaagcggctggactctccgtacgagccgggccggcgcaccggcgcctgg
cgcaagatcaagaacgtccagcgccaggagctggtcatcgccgggtggctgcccggggag
gggcggaggcgcgagcggatcggcgcgctactggtggccgtgcgcgagggcgacgcgctg
cgctacgccggccgcgtgggcacggggttcacggaggccgagctggagcgcctggcgggc
ctgctgggcccgctggagcgcgacgcctcgccgctggacgtcgtgcccaaggcggtgaag
atcccgcgcgaggcgatctacgtcgagccccggctggtctgcgaggtcgagttcctggag
tggtcgcgcgagggcgtcctgcgcgccccctcctacaaggggctgcgcgacgacaagccg
gcggggctcgtcgtgcgcgagcggctgcgcacgggcggcgcgggctcggcggtgctcgcc
gagatcgacggccgcgagctgcggctgaccaacgtggacaagcccctctgggcctccggg
cacacgaagggcgacctcatccgctacctcgtcgagctggccccgacgctgctgccccac
ctcgagcaccgcccgctgacgctcaagcgctatcccgacggcgccgacgccaagttcttc
tacgagaagcaggcgccgtcgcaccggcccgactgggtcgccgtcgcgcccgtccgccac
gcccgcgagaagaccatcacctacgtgctggcccaggacgcggccaccctggcctggctg
ggcaacctggccgacctcgagctgcacaccccgatgcaccgcgtgcgggagacctccggc
atcaccgggccgacgatgatcgcgttcgacctcgaccccggtgagcccgcgggcctgctg
gagtgctgccgcgtcgcggtcgtcctgcaggggatgttcgagcacctcgggctgcaggcg
ttcccgaagacgtcgggctcgaaggggatgcaggtctacgtcccgctcaacacgcccgag
accacgacctacgcccagaccaagggcctggccagggccgtcgccgagctgctggaggcc
gaggccggcgatctggtggtctcgcggcaggccaagcgcctgcgcccggggcgggtgctc
gtggactggagccagaacgacgacaacaagacgacggtgtgcgtgtactcgccacgggcc
cgggagcgcccgacggtctccacgccgctggcctgggacgaggtcgcggccgcgctggac
gccggcagcgcggacggcctggtcttcgacctcgacggcgtgctggcgcgcgtgcgcgac
cagggcgacctcttcgccccggtgctcacgctggtccaggagctgccggcgctctga
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