Bacillus sonorensis: S101395_03423
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Entry
S101395_03423 CDS
T06571
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bson
Bacillus sonorensis
Pathway
bson03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bson00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
S101395_03423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bson03400
]
S101395_03423
Enzymes [BR:
bson01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
S101395_03423
DNA repair and recombination proteins [BR:
bson03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
S101395_03423
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASB89930
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Position
3225270..3227117
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AA seq
615 aa
AA seq
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MAITMQPVLTSEPPLGEHWRYEAKYDGYRALLSVSKTGVSLISRNSQPLDKLFPEIVMDA
KTKLTTLEDLLPFTVDGEIVSLTNRFRSSFEYVQKRGMMKRNDLIGKAAETKPCQYLAFD
LLTYKGEAVASLPYTERKQKLFDLLKRLGLPMAPEPRSTERIQYIPETQDFHSLWDAVKR
FDGEGIVAKKKDSRWLENKKTAEWLKLKNYKKAAVFMTGYNKANGYMTISVSDRGQIREM
GSVSHGLGEQERNAILAIVKEHGRETKAGEYAIDPSICLTVHYLTIHFGTLREVSFVSFE
FDMSWEECTYTRLLLHSRHVHPSLQLTSLDKVIFPESEKSKADYISYLAEIGDFLLPFLE
NRALTVIRYPHGAGGESFFQKNKPDYAPEFVTSIKDDEHEHIVCHDYSVLFWLANQLALE
FHIPFQTADTEDPTEIVFDLDPPSQSEFPLAVRAAEELRRLFDQLGLISFPKLSGNKGIQ
IYIPISKNAFTYEDTRTFTSFAATYCVSLFPDLFTTERLIKNRSGKLYIDYVQHAPGKTI
ICPYSARGNGIGTVAAPLFWEEVGQNLSPADFTMEAVIKRTKELGCPFEGFFRQPQDQQI
KAILNHLKDTQRAGS
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggccatcacaatgcagcccgttctcacgtccgagccccccttaggcgaacattggcgg
tacgaagccaagtacgacggctatcgggcccttctgagcgtctccaagaccggggtctca
ttgatcagcagaaacagccagcctttagataagctgtttcccgagattgtgatggatgcc
aaaaccaagctgacgaccctcgaagaccttctcccctttacggtcgacggcgaaatcgta
tccttgacaaaccgctttcgttcaagctttgagtatgtacaaaaaagaggcatgatgaaa
aggaacgatctcatcgggaaagcggccgaaacaaaaccgtgccaatatctcgcctttgat
ttgctgacatacaaaggggaagcggtggcttcattaccttatacagaacggaaacagaag
ctttttgacttgctgaaacgactcggactgcccatggctcccgagccccgctcaactgaa
cggattcagtatatcccggagactcaggattttcattcactttgggacgcggtcaaaagg
tttgatggcgaaggaattgtcgcgaagaaaaaagacagccgctggctggaaaataaaaaa
acggcggagtggcttaagcttaaaaactataaaaaagccgccgtctttatgacgggatac
aataaggcaaacggctatatgacgatttccgtttccgaccgcggacaaatcagggaaatg
ggatctgtttcccacgggctcggagagcaggaacgaaacgccattctcgccatcgtaaaa
gaacatggaagagaaacaaaggccggagaatatgcgattgacccttcgatttgtttgacg
gtgcattatttgacgatacattttggcacactgcgagaagtatcgtttgtttcatttgaa
tttgatatgtcatgggaagaatgcacatatacacggcttttgcttcactcaagacatgtt
catccatccttgcagctgacaagccttgacaaagtgatttttccggaaagtgaaaaatcg
aaagccgactatatcagctatcttgcagagatcggcgactttctgctcccttttttagaa
aaccgggcccttaccgtcatccgctatccccacggagccggcggggaatcttttttccaa
aaaaataagcctgactacgccccggagtttgtgacatccatcaaggatgacgaacacgag
cacatcgtctgccacgattactccgttttgttctggcttgccaatcagcttgcactggaa
tttcatatcccttttcaaacggccgatacggaagatccgaccgaaatcgtatttgacctt
gatcctccatcacaatcggaatttccgctcgccgttcgcgcggcggaagagctccgccgt
ttattcgaccagctcggcctcatttcgtttccgaagctgtcgggtaataaagggatacag
atctatataccgatttcaaaaaacgcatttacttatgaagacacccgcacctttactagc
tttgccgccacttattgcgtctcgctttttcccgatctgtttacaacagaacggctgatt
aaaaacaggagcggaaagctttacattgactatgtccagcatgcgcctggaaagacgatc
atctgcccgtactctgcaagaggaaacgggatcggcacggttgctgctccgcttttttgg
gaggaggtcggtcaaaacctgtctcccgctgattttacaatggaggctgtcatcaaacgg
acaaaagaattgggatgccctttcgaaggttttttcagacagccccaggatcaacagatc
aaagcgattctcaatcacttaaaagacacgcaacgggcgggaagctga
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