Betta splendens (Siamese fighting fish): 114844510
Help
Entry
114844510 CDS
T08231
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03030
DNA replication
bspl03410
Base excision repair
bspl03420
Nucleotide excision repair
bspl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
114844510 (lig1)
03410 Base excision repair
114844510 (lig1)
03420 Nucleotide excision repair
114844510 (lig1)
03430 Mismatch repair
114844510 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bspl03032
]
114844510 (lig1)
03400 DNA repair and recombination proteins [BR:
bspl03400
]
114844510 (lig1)
Enzymes [BR:
bspl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
114844510 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
114844510 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
114844510 (lig1)
DNA replication proteins [BR:
bspl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
114844510 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
114844510 (lig1)
DNA repair and recombination proteins [BR:
bspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
114844510 (lig1)
NER (nucleotide excision repair)
Other NER factors
114844510 (lig1)
MMR (mismatch excision repair)
Other MMR factors
114844510 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
114844510
NCBI-ProteinID:
XP_028987784
EnsemblRapid:
ENSBSLG00000016938
UniProt:
A0A6P7L3T4
LinkDB
All DBs
Position
17:complement(11930559..11968204)
Genome browser
AA seq
1079 aa
AA seq
DB search
MCSTDSSYTNFPYIKLATNVITVTIQSGPTWERVDRDEQLTLRFNCILSMLALTLRLRRL
PVRLAFTSNVPVASYHVFSQTHRSFFQPKSKDKGVQKKTTDETVKKFVKSPLKVQNGAQE
VDSPIKKVTKRSRQILDSDDDEVPVIKEQVASKVPEDKEASTKTAKKDDVVRPVPTPLSP
PPPPATPVTPATPATPASSTSPGTPCTPNSISPTGIVKRKTARKMFPKRKLDETRSSSES
PKEEPEANEEQGHLSKRPRVESTASSAGDSDEPMEEGAKEERAETAVTEKSPDEELENKK
KGGEPAKEQERLDKNGSDEGEKRAEGAERKTEAKEKTDDEKGPVRAKAEEVEKDTREGEE
SPKSQTAKKQKDKEPAKKAPISSFFAPRKAAVKMEKPEKNEKNASAERKSSVEESKDSKG
ESCSGQTDYDPSRPGYHPVDHACWKQGQKVPYLAVARTFEKIEEDSGRLRNIETLSNLFR
SVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQLDKIKAEAQEKG
DLGLVAESSRSNQRMMFQPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFS
EARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIE
EKSLILKQTYCEMPNYDVLIPVLLKEGIDQLPNHCKLTPGVPLRPMLAHPTKGVGEVMKR
FDEAAFTCEYKYDGERAQIHILETGEVRIFSRNQEDNTTKYPDIISRIPKVKKDSVVSCV
LDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCR
RRALLKESFSEVEGEFVFARSIDSDNTDTIAEFLEQSVRDSCEGLMVKTLEKDATYEIAK
RSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIG
TGFKDEDLEQHYKFLKDHILPKPRAYYRFDQSAEPDVWLDAVQVWEVKCADLSLSPVYKA
AMGMVDPEKGISLRFPRFLRIRDDKKPEDATSGAQIADLYRKQQQIQNQGDKAEPEDYY
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcacagacagtagctacaccaacttcccatatattaagctcgcaaccaacgta
ataacggtgacgatccagtccggacccacatgggagcgtgtggatcgtgatgagcagctg
acccttcgttttaactgcattcttagcatgttagcgttaaccttgcgtttgaggagactt
cctgttagactggcgtttacgtcgaacgtacctgtagcgtcgtaccatgtcttcagtcag
acacacagatcattttttcagcccaagagcaaagacaagggcgttcagaagaaaaccaca
gatgagacggtgaaaaaatttgtgaaaagccctctaaaggttcaaaatggtgcccaggaa
gtggattcacccatcaagaaggttaccaagcgcagccggcaaatcctggacagcgacgac
gacgaagtaccagtaatcaaagagcaagttgcgtccaaggttccagaagataaagaagcc
tccactaaaacagcaaagaaggatgacgtggtgaggcctgttcccacccccctgtctcca
ccaccacctcctgccacccctgtgacccctgctactccagccaccccagcctcttccact
tcaccggggaccccctgcaccccaaactccatctccccgactgggatcgtcaaacgcaag
actgcgaggaagatgttccctaagaggaagcttgatgagaccaggagctccagcgaaagt
ccgaaggaggagcccgaggcaaatgaggagcagggtcacctcagcaaacgcccgcgtgtg
gagtccactgccagcagtgcaggggattctgatgaacccatggaggagggagcaaaggaa
gaaagagctgaaacggcagtgaccgagaaaagcccagacgaggaacttgaaaacaagaag
aaaggaggagagccggcgaaggaacaagagcgtctggacaaaaatggctctgatgaggga
gaaaagagagctgagggggcggaaaggaaaactgaagcaaaggagaagactgatgatgag
aaagggcccgtccgtgccaaggcggaagaggttgaaaaggacacgcgtgagggagaagag
agcccgaaaagtcaaacagcgaaaaagcagaaagataaggaaccggccaagaaagccccc
atcagcagtttctttgctcccagaaaagctgcagtgaagatggagaaaccagagaagaat
gagaaaaatgccagtgctgagaggaagagttcagtagaggagagcaaggactcaaaaggt
gagtcgtgctctggacagacagactatgacccgtccaggccgggctaccatcctgtggac
cacgcgtgctggaagcagggccagaaagtgccgtacttggctgtggctcgcacctttgag
aagattgaagaggactctggcaggttgaggaacattgagactctgtcgaacctgtttcgc
tccgtgctgctgctctctccagatgacctgctgtgctgcgtgtacctgtgtttgaaccag
ctgggtcctgcctacctgggcatggagcttggcgttggagagacggtgctaatgaaagct
gttgctcaagcaactgggcgacaattggacaaaatcaaggcagaggcgcaggagaaagga
gatctgggcctagtggccgagagttcccgtagcaaccaacgcatgatgttccagccggcc
agtctgacagcagggggcgtgttcaggaaattgaaggaaattgccagcatgagtgggaac
tcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgccgcttttct
gaggcccgctacatagtcaggtctctggctgggaaactcaggatcggcctggcagagcag
agtgtcctatcagccctgagccaggctgtgtgcttgaccccccctggacaaggtttccct
cccgctgtgattgacgcggggaaggggatgagcgctgagagcagacgggcctggatcgaa
gagaagagcctcattctcaaacagacttactgcgagatgcccaattacgatgtcctcatc
cctgttctgctaaaagagggcatagaccagcttcccaatcactgcaagctcactccaggg
gtaccgctgagacccatgttggctcatcccaccaagggcgtcggcgaagtgatgaagagg
tttgacgaggcagcgtttacctgcgaatacaagtacgacggcgagcgtgcacagattcac
attctggagaccggtgaagttcggatattcagccgtaaccaggaagacaacaccaccaaa
taccccgatatcatctctcgtattcccaaggtgaagaaggattctgtggtttcctgcgtg
ctggactcggaggcagtcgcctgggatcgtgagaagaagcagatccagccttttcaggtc
ctcaccacccgcaagagaaaggatgtggatgcgtcggagatcaaagtccaagtgtgcgtg
tatgcctttgaccttctctatctcaacggcgagtccctggtgcgacagccgctgtgtcgg
cgtcgggctctgctgaaggagagcttctcagaggtggagggagagtttgtgttcgcccgg
tccatcgattccgacaacaccgacaccatcgcagagttcctggagcagtctgttcgagac
tcctgcgagggcctgatggtgaagactctggagaaggatgccacctatgaaattgccaag
cgctcccataactggctgaagctgaagaaggactacctggagggggtgggggacaccgtt
gatctgtgtgtgatcggcgcctacctggggaaaggcaagaggacgggaacctacggcggc
ttcctgctggcctgctatgatgaggagaatgaagagttccagtccgtctgcaagatcggg
acaggctttaaggatgaagatctggagcagcattacaagttcttaaaggatcacattctg
cccaagccgcgcgcctactaccgcttcgaccaatcggcggagcccgacgtgtggctcgat
gccgtgcaggtctgggaggtgaagtgcgctgacctgtcgctgtcacccgtctacaaagct
gccatgggaatggtggatccagagaagggcatttctctgaggttccctcgcttccttcga
atccgagatgacaagaaaccagaggacgccacatctggagctcagattgctgatttgtac
aggaagcagcagcagattcagaatcagggggataaggctgaacctgaagactactactga
DBGET
integrated database retrieval system