Betta splendens (Siamese fighting fish): 114846850
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Entry
114846850 CDS
T08231
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03013
Nucleocytoplasmic transport
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114846850 (upf3a)
03015 mRNA surveillance pathway
114846850 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114846850 (upf3a)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
114846850 (upf3a)
mRNA cycle factors
P-body specific factors
114846850 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
114846850
NCBI-ProteinID:
XP_028991836
EnsemblRapid:
ENSBSLG00000014381
UniProt:
A0A6P7LB89
LinkDB
All DBs
Position
21:complement(5052611..5055928)
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AA seq
466 aa
AA seq
DB search
MRSEKDQMTVAKDKSVEIQFRDVPREAENATGNPKQKEEKKEVFTKVVIRRLPPNLSKDQ
LEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQE
YCAVVEFAPFQKISKKKLKKKDAKAGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEIE
AKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEERR
KRKDAEKQKKLSDKDIKIKLLRKNDRDDDVDSDRMKDKGDVGETDRGKWEKTGGQMKSKE
PKEKGQPESDKEQREQHGRRQRDKDHRGKEEDRKRQRHHYEFDKFMRRKEETKWGKGYCQ
DRAKKEGHHHGYSYCPDSGDKLGKEDREDLGSRKERLRNKVSEKDRPAMQLYQPGARNRK
RVGSTGKGFDCAPAGHSPEPAADRAYEAVAMATALDKAFDKGNDEP
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtggccaaagataaaagcgtcgagatccaattc
agggacgttccgagagaggcggagaacgccactggtaaccccaagcagaaagaagagaag
aaggaggtttttacgaaggtagtaattagaagacttcccccaaacctgtccaaagaccag
ttagaagaacagctgagtccactgccttcctacgactattttgagttcttcccagcagac
caaagtctctaccctcacctgttctctagagcttacatcaattttaagaaccctgaagac
atcctgctctttagagaccgatttgatggatatgtcttcattgacaacaaaggtcaagaa
tattgtgcagtcgtagagttcgctcctttccaaaagatttccaagaagaagcttaagaag
aaggatgcaaaagctgggagcattgaagaagacccggaatataaacgattcttggaaaat
tactcctgtgatgaggagaagtctatggcaaatccagagactctgctgggagaaatagaa
gctaagaccagagagctcatagccaagcgtacaacaccactgctggagtacatcaagaac
aaaaaaattgagaaacagagaataagggaggagaagagggaggagcgacgaagaagagaa
cttgaaaagaaaaggcaacgggaggaggagaagagaaagcgccgcgaggaagagagacgc
aaacggaaagacgcagagaagcagaagaagctgtctgataaagacattaaaatcaagctc
cttaggaagaacgacagagatgatgacgtggattcagaccgaatgaaggacaaaggtgac
gttggagagacagacagagggaaatgggagaagacgggaggacaaatgaagtcgaaggag
cccaaagaaaaaggtcagcctgagagcgacaaggagcagcgcgagcagcacggccgcagg
cagagagacaaagaccaccgcggcaaagaggaggacaggaagcgccagcggcaccactac
gagttcgacaagttcatgcgtcgcaaagaggaaaccaagtgggggaaaggttactgtcag
gaccgagccaagaaagaggggcaccatcatggctactcctactgccccgacagcggggac
aagctggggaaggaggacagggaggatctgggcagtaggaaggaacgcctccgaaacaag
gtgagcgagaaggaccgaccggccatgcagctctaccagccgggcgcccgcaaccgcaag
cgcgtgggctcgacgggcaaaggcttcgactgcgcgcccgccggccactcgccggagccg
gcggccgatcgcgcctacgaggcggtcgccatggcaacggcgctcgacaaggccttcgac
aaaggcaacgatgagccgtga
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