Betta splendens (Siamese fighting fish): 114869347
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Entry
114869347 CDS
T08231
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114869347 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114869347 (pcf11)
03019 Messenger RNA biogenesis [BR:
bspl03019
]
114869347 (pcf11)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
114869347 (pcf11)
Messenger RNA biogenesis [BR:
bspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
114869347 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
114869347
NCBI-ProteinID:
XP_029029356
EnsemblRapid:
ENSBSLG00000007271
UniProt:
A0A6P7PAX0
LinkDB
All DBs
Position
14:742324..752011
Genome browser
AA seq
1543 aa
AA seq
DB search
MDCLLINGYAIEKASVGFRGLLEDNMEDNAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQILKAPSTEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSQDPAWPIKPLPPTVNASIHVNPK
FLKQSEEAASPPPASTAAPTLAPPLVPPAAQPGSAISQSSLTQEHMIRQQLLAKQKQLLE
LQQKKIELELEQTKAQLAGGFSLPTTPVTTSGAQSSVQKPVSQTASVVRPWIPSSQTDSR
PATRDPRLNRLAPPATSQPKEQPPGKKENPPTTISPILTPEKRLPEKREKRKEVIEEKLK
SKSPSPLAKSVQSKTKQTEAAEAAKPADIIKKDPRLRKRTQDKMGEARDDELKEKKRCSD
KKERGEETARAAEPLRFNKVKLVNGSVAKHDREECADFKTGGNARTHARRRTRSRSRSRS
PTSSPKRKDRRSPKGRTRSTSLSPSPSHKSGKPRRVRTEELQHGKLERDERLPTKKNQSE
SRRSKRPVEDRHLESRDSHSPRAHDICGKEAKEAPHRWRSGWEETKHLKLSDNSHVKSGP
QRHKQYSTPTRPTTPRTPKHRLSVDANLQIPDVLNFASKKDLLRRASKRLESGEISQEEF
LNMAHKIKHFFQYQEEKQQRSEGWDDPNEFPPKKQQLLLTKPLSPLARPPDSMDAAERSY
FEHKSKLKKTQVSHHPAGEEWEEESLEESEKKEGSHKFSRVPLDRPGERRSQEPRPPLGP
MIEEYNHGKEFPTLKSLPGLRFTRRANPRESSEREWNSPLTERQRYNDRDEQKSGYDAPR
RYTPHLDPRRTEGPPHSGTVVHRNCSSPAGLEPLAPRFERERLSPLHQKDSAESPIPCFE
SPNSEHSDDGPINLDLALVHPHAVPKSILKAAPRGGPLSGVLQHSDSPEHTPPHDGHPSS
LYEGPSHMGPSRTHPPGWYEGSPQFEGPHHAGSSRFDGGGPLHPNMPERFDDVGKCDGPP
MSHGPVRPRDGMGRFDSHTLGQQPPVSFVGQGPGSGPFEGPVQRFEPPRRFDNMVPGSGP
MSFPQRPMRFEGPPNQMAPLRFDGPGRFEGPGPGPIYDMGGPPRFSGPPGQQGPPRFAPQ
HNLQPPMRPIYDNPMAPQQNFNIASQHFPESVNPQFSMPFAAQPNMQQTGNFNMQPAPPF
NQPAPNPYYNPAAPAVGLHQPVNMMGNMNQPFLPQNPVPFTSQENHFGQVDVNDLLSKLI
STGIIKPSQPDTTQNTNNESSCTTSAAPPVEEDDDEDQEVEEEDFTDLTGFSIDDMKQRF
ESVVTKLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQNHAGKVASKKVTHRRWYYSLTD
WIEFEEIADLEERAKSQFFEKENEEEVQKNQAAAKEKEFQSVRATKDQVGESCEICQEPF
ETYWVEEEEDWFLKDAVRVDDKNFHPSCFEDYKNSCIDVSPSASKLLTDHPLSAFIKTEE
GAASCLIAPSSVKQEVDTELPEVKKEEEEVILTECVQSEESKL
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atggactgtctgctaatcaatggttatgctattgaaaaggctagtgtagggtttcgcggg
ttgctggaggacaacatggaggacaacgcggcgagggaggatgcctgtcgagagtatcag
tcgtcgctggaagacctgacgttcaacagcaaaccacacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgcaattattgaagcacaaatcctc
aaggccccatctaccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggacgaaaacactagaaagtctctgttcaagttacgatcgacgtgggat
gatgtgtttcccctcaagaaactctatgcgctcgatgtccgggtcaactcccaggaccca
gcctggcccataaagccactgccgcccacagttaatgctagcattcacgtcaaccccaag
tttttgaaacagtctgaagaggctgcatctcctccgccagcatccacagcggcacccaca
ctggcgcctccgctagtgccacctgcagcccagccgggctcagccatcagccagtccagc
ctcacccaggaacacatgatccggcagcagctcctggctaaacagaaacaacttctggag
cttcaacagaagaagattgagctggaattggagcagacaaaagcacagctggcaggtgga
ttttcattgccaacgactccggtcaccacttcaggagcacagagttcagtccagaagcct
gtcagccagactgcttctgtggtccgaccatggatcccttcttcccagactgacagcagg
ccagccacgagagacccccgcctgaaccgccttgctcccccagctacgtctcagcccaaa
gaacagcctccagggaaaaaagagaacccccccacaacaataagtcctattctgacacct
gagaaacgactgccagagaaacgagaaaagagaaaagaggtgatagaggagaagctgaaa
tccaagtctccttctcccttggctaaaagcgtccagagtaaaaccaaacagactgaggct
gctgaggctgctaagccagcagacataataaagaaagatcccaggctgaggaaacgcaca
caggacaagatgggggaggccagagacgatgagctgaaagagaaaaaaagatgcagcgac
aagaaggagcgaggagaggagactgcacgggcagccgagccgctgaggtttaacaaagtc
aaactggtgaatggatcagtggccaaacatgacagagaggagtgtgcagacttcaagact
ggaggcaatgcacgaacacacgcccggagacgcactcgctctcggtcccgctcgcgctca
cccacatcttccccaaagaggaaagaccggcggtcaccaaagggcaggaccaggagcact
tctctgtctccatcaccctctcacaaatcaggcaaaccaaggagggtccgcacagaagag
ctgcagcacggcaagctggagcgagatgaacgtctgccgaccaagaagaaccagtctgag
agcagaaggtcgaagaggcctgtggaggaccggcatttggagtccagggactcacattcc
ccgcgagcccatgacatttgtggcaaagaggccaaggaggctcctcaccgctggaggagt
ggctgggaggaaaccaaacatttgaaactgtcagataactctcacgtgaagtctggacct
cagaggcacaaacagtacagcaccccgactcgcccaaccacccctcggaccccaaagcac
cgcctaagcgttgatgccaacctgcagatccctgatgtgctcaattttgcatccaaaaag
gacctgctcagacgggccagtaaacgtctggagagtggagagatttcccaggaagaattc
ctgaatatggcccacaagatcaaacatttcttccagtaccaagaagaaaagcagcagcga
tctgagggctgggatgaccctaatgaattcccccccaagaagcagcagctactgctgaca
aagcccctgtcaccacttgcacgacctcccgacagcatggacgcagcagaacggtcgtat
ttcgagcacaagtccaagcttaagaagacgcaggttagccaccacccagctggtgaggaa
tgggaggaggagagtctggaggagagcgagaagaaggagggaagccacaaattcagccgg
gtgccactggacaggccaggggaaaggagaagtcaagagccacggcctccacttggtccg
atgatcgaggagtacaaccatggtaaagaattccctactctaaagtctctaccgggcctt
cgcttcacgaggagagccaacccaagagagtccagtgaaagagagtggaactcaccgctg
actgagcgccaacgatacaacgatcgtgatgagcagaagagcggctatgacgccccacgg
agatacaccccacaccttgaccctcgcagaacagagggacctcctcattcaggcaccgtg
gtccacaggaactgttcgagcccagctggtctggagcccctggcccccaggtttgaacgg
gaacgtctgtcacctttgcaccagaaggactctgcagagagcccgatcccttgctttgag
agccctaatagtgaacactctgatgatgggcccatcaatctggatttggccttggtgcat
cctcacgctgtccctaaatccattctcaaagctgcgcctcgcgggggaccattgtcaggg
gtgctacagcacagtgactctccagaacacacaccacctcatgatggtcacccatcctct
ctgtatgaggggcccagtcacatgggtccctctagaacacaccctcctggttggtacgag
ggctcgccacagtttgaagggcctcaccacgcaggttcgagcaggtttgatgggggtgga
ccacttcatcccaacatgccagaaaggtttgatgatgtggggaagtgtgatggcccgccc
atgtctcatggtccagtgagacctagagatggtatggggcggtttgacagtcatacactc
ggccaacagccccctgtgagctttgtaggccagggccctggatcaggaccatttgagggc
ccagtgcagcgcttcgaaccaccgcggcgctttgataacatggttcctggatctggacca
atgagcttcccacagcgacccatgcgtttcgagggcccccctaaccaaatggccccattg
aggtttgatggccctggccgcttcgagggcccggggccaggtcccatatatgatatgggt
ggcccaccacgcttcagtggtccacctggccaacagggaccaccaaggtttgctcctcag
cataacctgcagcccccaatgaggccgatttacgacaaccccatggccccccagcagaac
ttcaacatagcttcccaacatttcccagagagcgtcaaccctcagttctcaatgccattt
gcagctcagccaaacatgcaacagactggaaacttcaacatgcaaccagcaccccccttc
aaccagccagctccaaacccctactataaccctgccgcccctgccgttggattgcatcaa
ccggtgaacatgatgggaaacatgaaccagcccttcctgcctcagaacccagtgcctttc
acatctcaggagaaccactttggtcaagtcgatgtcaacgacctgctgtccaaactcatt
tcgactggcattatcaaaccctcgcagcctgacaccacacagaacaccaacaatgagtcc
tcttgcacaacttcagcagctccacctgtggaggaagatgatgatgaggaccaggaggtg
gaagaggaagattttactgacctcactggctttagcatcgatgacatgaagcagcgattc
gagagtgtggtgaccaagctgtactcaggaaaccagtgctgcctgtgcagcatgagattt
actgcggctcagacagacatgtacgctgaccacttggactggcacttcagacagaaccac
gccggcaaggtggccagcaagaaggtgacgcaccggcgctggtactacagcctcacagac
tggatcgagtttgaggagatcgccgacctggaggaacgagcaaagagccagttctttgaa
aaagagaatgaggaggaggttcagaagaaccaggcggctgccaaggagaaagagttccag
agtgtgagagccactaaggaccaagtgggtgagtcatgtgaaatctgtcaggagccgttc
gagacatactgggtggaggaggaggaggactggttcctgaaggacgctgtcagggttgac
gataagaacttccacccgtcctgttttgaggactataaaaattcctgcatcgacgtctca
ccatccgcaagcaagttgctcaccgaccacccgctgagcgctttcataaagacagaggag
ggggctgcctcgtgtctcatagccccctcctccgtcaaacaggaagtggatactgagctt
cccgaggtgaagaaagaggaagaggaggtgattttaacagagtgtgtgcaatctgaagaa
agcaaactgtga
DBGET
integrated database retrieval system
