Brevibacterium spongiae: L1F31_14400
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Entry
L1F31_14400 CDS
T09030
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bspo
Brevibacterium spongiae
Pathway
bspo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L1F31_14400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bspo03400
]
L1F31_14400
Enzymes [BR:
bspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L1F31_14400
DNA repair and recombination proteins [BR:
bspo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L1F31_14400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UVI35297
LinkDB
All DBs
Position
complement(3212356..3214851)
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AA seq
831 aa
AA seq
DB search
MARHEQKVTVEGHRLTLSNLNKVLYPETKTTKGEILDYCATIAPHLIRHARDRIATRKRW
VDGVGTPDDPGDVFFEKNLPESAPSWIRSRAIRHSTGTKRYPLVNDLATLTYLTQMAALE
IHVPQWTVRAGAKDPGTIDSETRFPDRMVFDLDPGPGRGLADCIEVAQLVRELLEGMGLD
AYPVTSGSKGVHLYAPLDGSVSSQQVSDVAHELARSLEADHNDLIVSAMKKTLRENKVLI
DWSQNSAAKTTVAPYSLRGRFTPMVAAPRSWDEFDDPAAVEQVRFEEVLDRVDDFGDLLE
PLAEAVGGTASAPEPGAGSEPQSDPMSDEAPEVVRDRLEVYRSKRDPKRTSEPVPAKQGT
SGDGLTFVIQEHHARSLHWDFRLEHDGVLVSWALPKGPPTDPGKNHLAVQTEDHPLEYGS
FEGTIPKGEYGAGDVEIWDSGTCDIEKWQEGKEVIAVLHGREDGGLGAVRRFALFNTGGH
GPNKDPEKNWMIHLMEDESTNHGSKKEALPTDLSPMLASIGDIDSVRREAEDWAFEMKWD
GIRALARVQPGDGDRNGSVELTSRNGRDMTSTYPELRELVDCVDVDCVLDGEIVALGQGS
RPDFGRLQRRMGLSRESDVERERRRTPVYLMLFDVLHADGSSLLRKPYTERRERLFELVA
ESDHIQVPDAFEGSVDAAFESSRKLRLEGVMAKRTDSIYLPGKRTRTWAKLKHASTRDVI
IVGWRTGEGERSDSFASLLVAAHDGDDLVYLGRVGTGFDEAALRSLRSSLDRRSRKTPAL
TVPAAESRDAHWVRPDLVGEVRFSGLTEAGRLRHPVWRGLRSDIDSEDVRG
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
gtggcacgtcacgagcagaaggtcacggtcgagggccatcgactgacattgagcaatctg
aacaaggtcctctacccggagaccaagacgaccaagggtgagatcctcgactactgcgcc
accatcgcgccgcatctcatccgtcatgctcgggaccggatcgccacacgcaaacgctgg
gtcgacggggtcggcactcccgatgaccccggggacgtgttcttcgagaagaacctgccc
gaatccgccccgtcatggatccgctcgcgcgcgatccgacacagcaccggcaccaaacgc
taccccttggtcaacgatctcgcgacgctgacctacctcactcagatggccgcgctcgag
atccatgtgccgcagtggacggtgcgcgccggagcgaaggaccccggaacgatcgattcg
gagacccgcttccccgaccggatggtcttcgacctcgatccgggccccggtcgcggcctg
gccgactgcatcgaggtggctcagctcgtccgcgaactgctcgagggcatgggcctcgac
gcatacccggtgaccagcggttccaaaggcgtccacctctatgcaccgctggacgggtcg
gtgagctcgcagcaggtctccgatgtcgcccatgagctcgcccgcagcctggaggccgac
cacaacgatctcatcgtctcggcgatgaagaagacgctgcgggagaacaaggtgctcatc
gattggtcgcagaactcagcggccaagaccacggtcgccccgtattcgctgcgcggacgc
ttcacccccatggtcgccgctccccgcagctgggacgagttcgatgatccggccgcggtc
gagcaggtgcgtttcgaggaggtcctcgaccgcgtggacgacttcggggatcttctcgaa
cccctcgccgaggcggtcggaggaaccgcctcggcgccggagcccggagccggttcggag
ccccaatccgacccgatgtcggacgaggccccagaggtcgtgcgcgaccgactggaggtc
taccggtccaaacgggatccgaagcgcacgagcgaacccgtgccagcgaaacagggaacg
agcggggacggactgaccttcgtcatccaggaacaccatgcgaggagcctccactgggac
ttccgactcgaacacgacggtgtgctggtctcctgggccctgccgaaggggccgccgacg
gacccggggaagaaccacctggcggtacagaccgaggaccatcccctcgaatacggcagc
ttcgaaggcacgatcccgaaaggggagtacggagccggcgacgtggagatctgggactcc
ggaacctgcgacatcgagaagtggcaggagggcaaggaggtcatcgcggtcctccacggg
cgtgaggacggcggcctcggggcagtgcggcggttcgcactgttcaacaccgggggccac
ggtccgaacaaggacccggagaagaactggatgatccacctcatggaggacgaatcgacg
aatcacggatcgaagaaggaggctctgcccacagatctgtctccgatgcttgcgagcatc
ggcgacatcgattccgtgcgcagggaagccgaggactgggccttcgagatgaagtgggac
ggcatccgcgctctggcgagggtgcagccgggtgacggggaccgcaacggcagcgttgag
ctgaccagccgcaacggtcgtgacatgacgagcacttatccggagcttcgcgagttggtc
gactgtgtcgatgtcgactgcgtcctcgacggggagatcgtcgctctcggacagggcagc
agaccggatttcgggagactccagcgcagaatggggttgagccgggagagcgatgtcgaa
cgagagcggagacgcaccccggtttacctcatgctcttcgacgtcctccatgccgacgga
tcctcgttgctgcggaaaccgtacacggaacgtcgcgaacgtctgttcgaactcgtggcc
gaaagtgaccacatccaggtgcccgatgcttttgaaggcagcgtcgatgcagcattcgaa
tccagccggaagcttcgcctcgaaggggtgatggcgaagcggaccgacagcatctatctt
cccggaaagcgcactcgcacctgggccaagctcaagcatgcctcgacccgagatgtcatc
attgtcggctggcggaccggagaaggcgaacgctctgacagcttcgcctcattgttggtc
gccgcccacgacggcgacgacctcgtctacctggggcgtgtgggcaccgggttcgacgag
gccgccctgcggagtctgcgttccagtctcgatcgccggtctcggaagacgccggcgctc
acggtgccggctgctgagtcgcgagatgcccactgggtgcgacccgacctcgtcggggag
gtccggttctcgggcctgaccgaggccgggcgcctgcggcacccggtctggcgcggcctg
cgctccgacatcgactcagaggatgtgcggggctga
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