Bacillus subtilis subsp. subtilis RO-NN-1: I33_1508
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Entry
I33_1508 CDS
T01837
Symbol
ykoU
Name
(GenBank) spore germination DNA ligase YkoU
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsr
Bacillus subtilis subsp. subtilis RO-NN-1
Pathway
bsr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I33_1508 (ykoU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsr03400
]
I33_1508 (ykoU)
Enzymes [BR:
bsr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I33_1508 (ykoU)
DNA repair and recombination proteins [BR:
bsr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I33_1508 (ykoU)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEP90476
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Position
complement(1382012..1383835)
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AA seq
607 aa
AA seq
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MQPVLTSSPPIGAAWRYEVKYDGYRCIFRIHSSGVTLTSRNGVELSSTFPEITQFAKTVF
QHMEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQESANARPCCFLAFDLLER
SGEDVTLLSYLDRKKSLHDLISAAKLPASPDPYAKETIQYIPCYDHFDQLWEMVIKYDGE
GIVAKKTNSKWLEKKRSSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPIASVS
HGMRDEEKSAIREIMEQHGHQTPSGEFTLEPSICAAVQYLTILQGTLREVSFIGFEFQMD
WTECTYAQVMRHSKPVHPKLQFTSLDKIIFEKNKKTKDDFIQYMIEVSDYLLPFLKNRAV
TVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHEHIVCKDMSTLLWLCNQLALEFHVP
FQTIKSRRPAEIVIDLDPPSRDDFLMAVQAANELKRLLDSFGITSYPKLSGNKGIQLYIP
LSPEAFTYEETRQFTQLIAEYCTNALPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPY
STRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPLSAIL
HQLKKKS
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgcagccggtcttaacttcgtcaccgccgatcggagcggcatggcgttacgaagtaaaa
tatgacgggtaccgctgtattttccgcatccattcttcaggtgtgaccttaaccagcaga
aatggtgtggagctcagcagcaccttccctgaaatcacacaattcgccaaaaccgtcttt
cagcatatggaaaaagagcttccgctgacacttgatggtgaaatcgtatgtttggtgaat
ccttgtcgtgcagatttcgaacaccttcaagtgcggggacgtttgaaaaggccagacaag
attcaggaatcagcaaacgcgcggccgtgctgctttctcgcctttgatttgttagagcga
agcggagaagatgtaacgcttctttcgtatttggaccgcaaaaaatcgctgcatgatctc
atatccgcagcaaagcttcctgcatctccagatccttacgcaaaagaaaccattcaatac
attccctgttatgatcattttgatcaactctgggagatggtaataaaatatgacggagaa
ggaattgtagcgaaaaaaacaaacagcaaatggcttgaaaagaagcgatcgtccgattgg
ctcaaatataaaaactttaaacaagcttatgtttgcataacagggttcaaccctaacaac
gggtttctgacggtatcggtattaaaaaacggaataatgacaccgattgcctctgtctcg
cacggaatgcgcgatgaggaaaaaagcgctatacgcgagattatggaacagcacggacat
caaacaccctcaggcgaatttacgcttgagccttcgatttgtgcagctgttcaatactta
acaattctccaaggcacattaagagaggtatcgtttattggtttcgaattccaaatggac
tggaccgaatgcacgtatgcgcaagtcatgcgacactccaaaccggttcacccaaagctc
cagttcacaagcctggataaaatcatatttgaaaagaataaaaaaacaaaagatgatttt
attcagtatatgattgaagtcagtgactacctgctcccatttctgaaaaaccgcgctgtc
accgtcatccgctatccgcatggatctaggagcgaatcatttttccaaaaaaacaagccg
gactatgcgccggattttgttcaatctttctatgatggaagccatgaacatattgtctgc
aaggatatgtctacattgctatggctttgcaaccagcttgctttggagtttcacgttcct
tttcaaaccattaaaagcaggcgtccggctgagattgtcattgatttagacccgccttcg
cgagatgactttcttatggccgtgcaggccgcaaatgaactgaagcggctgttggattcc
tttggcatcacatcgtacccgaagctgtccggcaacaaaggcatccagctttatattccc
ttgtctcccgaggcatttacgtatgaagaaacacgccaatttacgcagctgatcgcagag
tactgcaccaatgcgcttcccgagctctttaccactgaacgcttgattaaaaacagacac
ggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgattatctgcccctat
tcgacgagaggaaatgagcttgggactgtcgcagcccctctctactggcatgaggtgcaa
tcatctttaacacccgctttgtttacaattgatactgtcatcgatcgaattaagaagcag
ggctgcccattttttgatttttaccgcaacccgcaagacgaaccgcttagcgccatattg
catcagttgaagaaaaagagctga
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