KEGG   PATHWAY: bstg00020
Entry
bstg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia stagnalis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bstg00020  Citrate cycle (TCA cycle)
bstg00020

Module
bstg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bstg00020]
bstg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bstg00020]
bstg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bstg00020]
bstg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bstg00020]
bstg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bstg00020]
Other DBs
GO: 0006099
Organism
Burkholderia stagnalis [GN:bstg]
Gene
WT74_13520  citrate synthase [KO:K01647] [EC:2.3.3.1]
WT74_24025  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WT74_27475  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WT74_23970  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WT74_30870  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WT74_13465  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WT74_13470  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WT74_07620  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
WT74_07625  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WT74_18540  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WT74_11155  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WT74_07630  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WT74_14040  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
WT74_14045  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WT74_25040  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
WT74_24010  fumarate reductase [KO:K00239] [EC:1.3.5.1]
WT74_24015  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WT74_24000  succinate dehydrogenase [KO:K00241]
WT74_24005  succinate dehydrogenase [KO:K00242]
WT74_11595  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
WT74_05475  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
WT74_23990  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WT74_21230  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
WT74_17570  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
WT74_26455  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
WT74_21395  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WT74_11165  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WT74_11160  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
WT74_09625  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bstg00010  Glycolysis / Gluconeogenesis
bstg00053  Ascorbate and aldarate metabolism
bstg00061  Fatty acid biosynthesis
bstg00071  Fatty acid degradation
bstg00190  Oxidative phosphorylation
bstg00220  Arginine biosynthesis
bstg00250  Alanine, aspartate and glutamate metabolism
bstg00280  Valine, leucine and isoleucine degradation
bstg00350  Tyrosine metabolism
bstg00470  D-Amino acid metabolism
bstg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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