Burkholderia stagnalis: WT74_10190
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Entry
WT74_10190 CDS
T04885
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bstg
Burkholderia stagnalis
Pathway
bstg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bstg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WT74_10190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bstg03400
]
WT74_10190
Enzymes [BR:
bstg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WT74_10190
DNA repair and recombination proteins [BR:
bstg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WT74_10190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AOK53030
UniProt:
A0A807EZ41
LinkDB
All DBs
Position
1:2311825..2315301
Genome browser
AA seq
1158 aa
AA seq
DB search
MPDNASNPPASPVARVKPGQRFAFDGAHGCADALAIARYLADNRHDVPLLAVICANAVDA
QRLAQEIGYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFSFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
FPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFAGDLDTSI
RRFTADTKQRHAFLSHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATGLP
ELTVDRHADDPLAALRTFVETSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
ASDERFALGVAPLSSGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYAGESKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALEPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIAIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKMPPQAHALVETHRLRLAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDRLRIETRSPDLAIRVSTIKE
TLRALGHSPRQGAAAASR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgccagacaacgcttccaacccgcccgcctcgcccgtcgcgcgcgtcaagcccggccag
cgcttcgccttcgacggcgcgcacggctgcgccgatgcgctcgccatcgcccgctacctt
gccgacaaccgccacgacgtgccgctgctcgcggtgatctgcgcgaacgcagtcgacgcg
cagcgcctcgcgcaggaaatcggctatttctcccccgacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtgtcagagcgt
ctcgcgacgctgcacgacctcggcgagggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtccttcatggccgcctacacgttctcgttcgca
cagggcgagcggctcgacgaggcgaagctgaaggcgcaactgacgctcgccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctg
ttcccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgacccggacacgcagcgcagcctgtacccggtgcgcgacgtgcgcctg
ctgccgggccgcgaattcccgttcgacgaggccgcgcgcaccgcgttccgcagccgctgg
cgcgagaccttcgagggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgagacggccacgctg
ttccactacctgccgcaggatgcgcacctcgtgttcgcgggcgacctcgacacgtcgatc
cgccgcttcaccgccgacacgaagcagcgccacgcgttcctgtcgcacgaccgcgaacgg
ccgatcctcgagccgcagcggctgttcctgtccgacgaggatttcttcgcgttcgcgaag
ccgttcgcgcgcgtcgtgctgcccgcgcagccggcgggcggctgggcgaccggcctgccc
gagctcaccgtcgaccgccacgccgacgatccgctcgccgcgctgcgcacgttcgtcgag
acgtcgggcaagcgcgtgctgctgaccgtcgaatcggcgggccgccgcgagacgatcctg
caactgctagccgagcatcacctgcggcccgcatcgaacgatcacttcgccggctggctc
gcgagcgacgagcgcttcgcgctcggcgtcgcgccgctgtccagcggcttcgcggtgccc
ggcgaaggctacgcgatcgtcaccgagaccgaactctacggcgcgctcggccgccgcgcg
gggcgccgccgccaggaacaggcgagcaacgtcgacgcgatggtgcgcgacctgtcggag
ctgaaggtcggcgatccggtggtgcacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggacctcggcgaaggcgagacggaattcctgcatctcgaatacgcgggcgag
agcaagctctacgtgccggtcgcgcagctgcacgtgatctcgcgctacagcggcgccgat
ccggacagcgcgccgctgcatgcgctcggctcgggccagtgggagcgcgcgaaacgcaag
gccgcgcagcagattcgcgacacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccatgcgttcgcgctcgagccgcgcgactacgtgaagttcgccgagagc
ttcggcttcgaggaaacgcccgaccaggccgccgcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgcggccttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgcggaccgcttcgccgactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagacggccaaggaagtgaacgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcggctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaggtcgacgtgctgacgctgaccgcg
acgccgatcccccgcacgctcgggatggcgctcgagggcctgcgcgacttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaggaaagc
gtgattcgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtacttcctgcac
aacgaggtcgagacgatcgagaatcgcaaggcgatgctcgaggaactggtgcccgaggcg
cgcatcgcgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgacgatcatcgagaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcatcgctccgacaagttcggccttgcgcagctc
caccagctgcgcggccgcgtcggccgttcgcaccaccaggcttacgcgtacctgctcgtg
cacgatccgcaggcgctgaccaagcaggcgcagcgccggctcgaagcgatccagcagatg
gaggaactcggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcgacgaccgaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggaacggctgtcgctgtacaagcggctcgcgaactgcgaacacggc
gatgcgatcgacggtatccaggaggaactgatcgaccgcttcggcaagatgccgccgcag
gcgcacgcgctggtcgagacgcaccgcctgcgcctcgccgcgaaaccgctcggcatcgtg
aagatcgatgcgagcgaggttgccatcgggctgcagttcgagccgaacccgccgatcgat
ccgatgcggatcatcgagatggtgcagaagcatcgccacatcaagctcgccgggcaggac
cgcctgcgcatcgagacgcgctcgccggatctcgcgatccgcgtgtcgacgatcaaggag
acgctgcgcgcgctcggccactcgccgcggcaaggcgcggctgcggcgtcgcgttga
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integrated database retrieval system
