Burkholderia stabilis: BBJ41_02210
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Entry
BBJ41_02210 CDS
T04946
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bstl
Burkholderia stabilis
Pathway
bstl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bstl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBJ41_02210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bstl03400
]
BBJ41_02210
Enzymes [BR:
bstl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBJ41_02210
DNA repair and recombination proteins [BR:
bstl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBJ41_02210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AOR66464
UniProt:
A0A1D7Z9C2
LinkDB
All DBs
Position
1:complement(448817..452287)
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNASNPSASPVARVKTGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIGYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLSHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHADDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRPASNDHFAGWL
TSDERFALGVAPLSSGFSVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVSAAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNQVETIENRKAMLEALVPEA
RIMIAHGQMHERELERVMRDFVGQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEVAIGLQFEPNPPIDPMRIIEMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALSPKQGAAAPAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgcttccaacccgtcagcctcgcccgttgcccgcgtcaaaaccggccag
cgtttcgccttcgacggcgcgcatggttccgccgacgcgctcgccatcgcccgttatctt
gccgacaaccgccaggacgtgccgctcctcgcggtgatctgcgccaacgcggtcgacgcg
cagcggctctcgcaggaaatcggctacttctcgcccgatgcccgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcgt
ctcgcgacactgcacgatctcggcgaaggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgccggcctcgttcatggccgcgtacacgttcgcattcgcg
cagggcgagcggctcgacgaggcgaagctgaaggcgcagctcacgctggccggctacgag
cacgtgagccaggtcgtgcggcccggcgaatattgcgtgcgcggctcgctgatcgacctg
tacccgatgggctcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcgttcgaccccgatacccagcgcagcctgtatccggtgcgcgacgtgcgcctc
ttgcccggccgcgagtttccgttcgacgaagccgcgcgcaccgcgttccgcagccgctgg
cgcgaaaccttcgaaggcgacccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggtatcgagtattacctgccgctcttcttcgacgagacggccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgacctcgaagcgtcgatc
cgccgcttcacggccgacacgaagcagcgccacgcgttcctgtcgcacgaccgcgagcgg
ccgatcctcgagccgcagcgcctgttcctgtccgacgaggatttcttcgccttcgcgaag
ccgttcgcgcgcgtcgtgctgcctgcccagccggccggcggctgggcgacggcgctgccc
gagctcaccgtcgatcgtcatgccgacgatccgctcgcttcgctgcgcacgttcgtcgag
tcttccggcaagcgcgtgctgctgaccgtcgaatcggccggccgccgcgagacgatcctg
caactgctcgccgagcatcacctgcgccccgcgtcgaacgaccacttcgcgggctggctc
acgagcgacgaacgcttcgcgctcggcgtcgcaccgctctcgagcggcttctcggtgccg
ggcgaaggctacgcgatcgtcaccgaaaccgagctgtacggcgcgctcggccgccgtgcg
ggccgccgccggcaggaacaggccagcaacgtcgacgcgatggtgcgtgacctgtcggag
ctgaaggttggcgacccggtcgtccatgcgcagcacggtatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgaaaccgaattcctgcatctcgaatattcgggcgac
agcaagctctacgtgcccgtcgcgcaattgcacgtgatctcgcgctacagcggcgccgat
ccggacagcgcaccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcagcagatccgcgacacggccgccgagctgctgaacctgtatgcgcgccgcgcg
gcccgcgaaggccacgcgtttgcgctcgacccgcgcgattacgtgaaattcgcggaaagc
ttcggcttcgaggaaacgcccgaccaggccgcggcgatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtcgcgctactgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgccgaccgcttcgcggactgg
ccggtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgagcgcggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgtctcggcctcgtcatcatcgacgaggaacaccgtttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccaattccgcgcacgctcgggatggcgctcgagggcttgcgcgatttctcggtgatc
gcgaccgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagc
gtgatccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtatttcctgcac
aaccaggtcgagacgatcgagaaccgcaaggcgatgctcgaggcgctcgtgcccgaggcg
cgcatcatgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgac
ttcgtcgggcagcgcgcgaacgtgctgctgtgcacgaccatcatcgagaccggcatcgac
gtgccgagtgcgaacacgatcatcatgcaccgctcggacaaattcggcctcgcgcagctt
caccagttgcgcggccgcgtcggccgatcgcaccaccaggcctatgcgtacctgctggtc
cacgatccgcaggcgctgaccaagcaggcgcagcgccggctcgaggcgatccagcagatg
gaggaactcggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcaatcgggcgagatccacgaaatcggcttccagctctacacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcc
ccgctcgccgcaacgacggaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcgcctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaggagctgatcgaccgcttcggcaagctgccgccgcag
gcgcatgcgctcgtcgagacgcaccggctgcgcatcgccgcgaagccgctcggtatcgtg
aagatcgacgcgagcgaggtcgcgatcgggctgcagttcgagccgaacccgccgatcgat
ccgatgcggatcatcgagatggtgcagaaacaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgcgtatcgacgatcaaggaa
acgctgcgcgcgctcagcccgaagcagggagcggctgccccggcacgctga
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