Bacteriovorax stolpii: C0V70_01995
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Entry
C0V70_01995 CDS
T05263
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsto
Bacteriovorax stolpii
Pathway
bsto03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C0V70_01995 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsto03400
]
C0V70_01995 (ligD)
Enzymes [BR:
bsto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C0V70_01995 (ligD)
DNA repair and recombination proteins [BR:
bsto03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C0V70_01995 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AUN96896
UniProt:
A0A2K9NMZ3
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All DBs
Position
426756..428606
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AA seq
616 aa
AA seq
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MTFREIGSLQLATLVDSLPLSEDWVHEIKYDGYRTLCRKDKKSIQLVTRGGLDWSKKYQS
ILKECEKLPVDSIVMDGEIVWLDNQGHSSFQGLQNALEAHRDGQLIYYVFDLLFLNGFDI
RNFPLIERKKLLEQVIQKTKSQKIIYSSHWNEDGASVFKSACDNKLEGIISKNIHGQYLS
GRGKNWLKIKCKNVQEFVIGGYTLQKNGASLGAVLLGAHNEKGEFQYLGKVGTGFNNKTS
TNLLKNLKTLQIIKSPFEVKSPKGEKQLWVKPTLVANIEFAAWTEDKILRHAAFKELRKD
KKASEVILELPVKKTVLRKKIKTTSEISSPDKVLYPEDQITKQDLLDYYKAIEKWIIPYL
RDRPLALLRCPAGYDHTCFFQKHAETNEEGIKSQNIVSKLKEKKEQVLYIDSMKGLRELV
QLGTLEIHVRGGDYQHIDFANQIVFDFDPDEGMSFEKVKSAAFELKALLEKLKLKSFIKV
SGGKGVHVQVPVSPKYDWDEIKEFAKKICEQMESTHPEKYTTTVSKAKRKGKIFLDYLRN
GYGATAIAPYSVRAREHAPVALPITWAEAKKLKSAHSYTLKEVPKLLKKRSDPWKGYLKL
KQKIKVLDDFRKHKKR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
ttgacttttagagagatcggatcacttcaattagcaactctggtcgattcacttccacta
agtgaagattgggtccatgaaataaaatacgacggctatcgcaccctatgccgaaaagat
aaaaaatcaatccaactggttacccgtggcggacttgattggagtaaaaaataccaaagc
attctaaaagaatgcgaaaagttgccagttgacagcatcgtgatggatggagaaatcgtc
tggcttgataaccaaggacattcgagttttcaggggctgcagaatgctcttgaagcacat
cgggacggacaactcatttattatgtttttgatctcctctttttaaatggttttgatatc
agaaattttcctcttattgaaagaaagaaacttcttgagcaagttatccagaaaacaaaa
tctcaaaagattatttacagctcccattggaatgaggatggagcaagtgtttttaaaagt
gcctgcgacaataaactggaagggattatttcaaaaaatattcacggacagtatttatca
ggaagagggaagaattggttaaagataaaatgtaaaaatgttcaggaatttgttattggc
gggtatacattgcaaaaaaatggagcttctcttggtgctgttttactgggagctcataac
gagaaaggagaatttcaatacctcggaaaggttggaactggttttaacaataaaactagc
accaacttattaaagaatttaaaaacacttcaaataatcaaatctccttttgaggttaaa
tcccctaagggagaaaagcagctctgggtaaagcctacccttgtggccaatattgagttc
gcagcctggacggaggataagatcttgagacatgcagcttttaaagaattgcgaaaagat
aaaaaagcatcggaggtcatactggagctaccggtaaaaaaaacggtacttcgaaagaaa
attaaaacgacatcagagataagcagtccggataaagttctttacccggaagatcaaatc
accaaacaagacctgttggattattataaagcgattgaaaaatggattattccttattta
agagatagacctcttgctctccttagatgtccggcgggttatgatcacacttgttttttt
cagaaacatgcagagaccaatgaagaagggattaagagtcaaaacatcgtctctaaactt
aaggaaaagaaagaacaagtgctttatatagattccatgaaaggactaagagaattagtt
caattaggcacactggaaatccacgtgagaggtggcgattatcagcatattgattttgcc
aatcagatcgtttttgattttgacccagatgaaggaatgagttttgagaaagttaaatct
gcagcctttgaacttaaggccttattggaaaaattgaaattaaaatcctttattaaggtc
agtggagggaagggagtccatgtccaagtgccagtttctccaaaatacgattgggatgaa
attaaggagtttgctaaaaagatttgtgaacaaatggagtcaactcatcccgaaaaatat
acgacgacggtgtctaaggcaaaaagaaaaggaaagatcttcctcgattatctgagaaat
ggatatggcgcaacagcgatcgctccttattccgttagagcgagagagcatgctcctgtt
gccttaccaattacctgggcagaggcgaaaaaattaaagagcgctcattcttacactctt
aaagaagtgcctaaacttcttaaaaaaagatctgatccttggaaggggtatttgaaatta
aagcaaaagatcaaagtgttggatgattttagaaaacataaaaaacgttaa
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