Bacillus stercoris: QI003_07235
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Entry
QI003_07235 CDS
T09305
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bstr
Bacillus stercoris
Pathway
bstr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bstr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QI003_07235 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bstr03400
]
QI003_07235 (ligD)
Enzymes [BR:
bstr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QI003_07235 (ligD)
DNA repair and recombination proteins [BR:
bstr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QI003_07235 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WGV96809
LinkDB
All DBs
Position
complement(1413077..1414915)
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AA seq
612 aa
AA seq
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MALTMQPVLTSSPPIGEEWRYEVKYDGYRCILRIHSSGVTLTSRNGVELNSTFPEITQFA
KSVFQPMEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLKRPDKIQESANERPCCFLAFD
LLERNGEDVSLLSYLDRKKSLYDLMSAAKLPASPDPYAKETIQYIPCYDHFDQLWEMVMK
YDGEGIVAKKTNSKWLGKKRSSDWLKYKNFKQAHVCITGFNPNNGFLTVSVLKNGIMTPI
ASVSHGMRDEEKSAIREIMEQHGHQAPSGEFTLEPSICATVQYLTILQGTLREVSFVGFE
FQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIEVSDYLFPFLK
NRAVTVIRYPHGARSESFFQKNKPDYAPDFVQSFYDGSHEHIVCEDMSTLLWLCNQLALE
FHVPFQTIRSSRPAEIVIDLDPPSRDDFIMAVQAANELKRLFDSFGITSYPKLSGNKGIQ
LYIPLSFEAFTYEETRQFTQLIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTI
ICPYSTRGNELGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKKGCPFFDFYRNPQDEPL
SAILHQLKKRAD
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggcgttaaccatgcagccggtccttacttcgtcaccgccaatcggagaagaatggcgt
tacgaagttaaatatgacgggtaccgatgtattcttcgcatccattcttcaggtgtgacc
ttaaccagcagaaatggtgtggagctcaacagcaccttccctgaaattacacaattcgcc
aaaagtgtctttcagcctatggaaaaagaacttccgctgacacttgatggagaaatcgta
tgtttggtgaatccttgtcgtgcagattttgaacatcttcaagtacggggacgtttaaaa
aggccagacaagattcaggaatcggcaaacgagaggccgtgctgctttctcgcttttgac
ttattagagagaaacggagaagatgtatcgcttctttcgtatttggaccgtaaaaaatcg
ctgtatgacctcatgtccgcagcaaagcttcctgcgtctccagacccttacgcaaaggaa
accatccaatatatcccctgttacgatcattttgatcaactctgggaaatggtaatgaaa
tatgacggagaaggaattgtagcgaaaaaaacaaacagcaaatggcttggaaagaagcgg
tcgtccgattggctcaaatataaaaactttaaacaagcacatgtttgcataacaggcttc
aaccctaacaatgggtttctgacggtgtccgtattaaaaaacgggatcatgacaccgatt
gcctctgtctcgcacggaatgcgtgatgaggaaaaaagcgcgatacgagagattatggaa
cagcacggacatcaagcaccttctggcgaatttacgcttgaaccttctatttgtgcaact
gttcaatacttaacgattcttcaaggcacactaagagaggtatcgtttgtcggtttcgaa
ttccaaatggactggaccgaatgcacgtatgcgcaagtcatacgccactccaaaccggtt
cacccaaagcttcagttcacaagcctggataaaatcatatttgaaaagaataaaaaaaca
aaagaagattttattcagtatatgattgaagtcagtgactacctgtttccatttctgaaa
aaccgtgctgtcaccgtcattcgctatccgcatggagctaggagcgaatcatttttccaa
aaaaacaagccggactatgcgccggattttgttcaatccttctatgacggaagccatgag
catattgtctgcgaggatatgtctacattattatggctttgcaaccagcttgctttggag
tttcacgttccttttcaaaccattagaagcagccgtccggctgagattgtcattgattta
gacccgccttcgcgagatgactttattatggccgttcaggctgcaaatgaactgaagcgg
ctgtttgactcctttggcattacttcgtacccgaagctgtccggcaacaaaggcatccag
ctttatattcccttgtcttttgaggctttcacgtatgaagaaacacgccaatttacacag
ctgattgccgagtactgcaccaatgcatttcccgagctatttaccactgaacgcttgatt
aaaaacaggcatggcaaattgtatcttgattatttgcagcatgcagaaggaaaaacgatt
atctgtccctattcgacgagaggaaatgagctcgggactgtcgcggcaccgctttactgg
catgaagtccaatcatctttaacacccgctctgtttacaattgataccgtcattgatcga
attaagaagaagggctgcccattttttgatttttaccgcaacccgcaggacgaacctctt
agcgctattttacatcagttgaaaaaaagagctgactaa
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